Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0770
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  33   0.23 
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   32   0.30 
SB_56827| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 305 YCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           YC++ +F    I   C + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 105 YCSLFVFI--TIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVL 151



 Score = 31.9 bits (69), Expect = 0.40
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 326 RLSLKCLYCNVLIFFFHIIFINCQ-YTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           RL +   YC++ +F   I  ++ + + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 218 RLFMIYAYCSLFVF---ITIVHARLFMIYAYCSLFVFITIVHACLFMIYAYCSLFVL 271



 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 305 YCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           YC++ +     I   C + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 5   YCSLFVLI--TIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVL 51



 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 305 YCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           YC++ +     I   C + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 25  YCSLFVLI--TIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVL 71



 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 305 YCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           YC++ +     I   C + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 125 YCSLFVLI--TIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVL 171



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 305 YCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           YC++ +     I   C + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 45  YCSLFVLI--TIVHACLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVL 91



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 305 YCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           YC++ +     I   C + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 145 YCSLFVLI--TIVHACLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVL 191



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 326 RLSLKCLYCNVLIFFFHIIFINCQ-YTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           RL +   YC++ +    I  ++ + + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 78  RLFMIYAYCSLFVL---ITIVHARPFMIYAYCSLFVFITIVHACLFMIYAYCSLFVL 131


>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 305 YCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           YC+  +F    I   C + I  +C L+V I+ +H  +  +  F S+FVL
Sbjct: 124 YCS--LFLLITIVHACLFMIYAYCSLFVLITIVHACLFMIYAFCSLFVL 170



 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 305 YCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           YC++ +     I   C + I  FC L+V I+ +H  +  +  + S+FVL
Sbjct: 144 YCSLFVLI--TIVHACLFMIYAFCSLFVLITIVHARLFMIHAYCSLFVL 190



 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 326 RLSLKCLYCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           RL +   YC++ +     I   C + I  +C L++ I+ +H  +  +  + S+FVL
Sbjct: 97  RLFMIYAYCSLFVLI--TIVHACLFMIYAYCSLFLLITIVHACLFMIYAYCSLFVL 150



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -2

Query: 326 RLSLKCLYCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           RL +   YC++ +    I+     + I  +C L+V I+ +H  +  +  F S+FVL
Sbjct: 177 RLFMIHAYCSLFVLIT-IVHAGL-FMIYAYCSLFVLITIIHACLFMIYAFCSLFVL 230


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -2

Query: 326 RLSLKCLYCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           RL +   YC++ +     I   C + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 97  RLFMIYAYCSLFVLI--TIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVL 150



 Score = 31.9 bits (69), Expect = 0.40
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = -2

Query: 344 IC-NY-Y*RLSLKCLYCNVLIFFFHIIFINCQ-YTIVIFCKLYVHISELHIIIIKVTRFS 174
           +C NY Y R+S+   YC++ +    I  ++ + + I  +C L+V I+ +H  +  +  + 
Sbjct: 69  VCLNYNYSRVSVIYAYCSLFVL---ITIVHARLFMIYAYCSLFVLITIVHACLFMIYAYC 125

Query: 173 SVFVL 159
           S+FVL
Sbjct: 126 SLFVL 130



 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 305 YCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           YC++ +     I   C + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 124 YCSLFVLI--TIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVL 170



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 305 YCNVLIFFFHIIFINCQYTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           YC++ +     I   C + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 144 YCSLFVLI--TIVHACLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVL 190



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 326 RLSLKCLYCNVLIFFFHIIFINCQ-YTIVIFCKLYVHISELHIIIIKVTRFSSVFVL 159
           RL +   YC++ +    I  ++ + + I  +C L+V I+ +H  +  +  + S+FVL
Sbjct: 177 RLFMIYAYCSLFVL---ITIVHARLFMIYAYCSLFVFITIVHACLFMINAYCSLFVL 230


>SB_56827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 145 FPSQYNTKTELKRVTLIIIMCNSDICTY 228
           FP     KT +K    + ++CN+D C+Y
Sbjct: 186 FPKGCTLKTPVKLRQAVRVICNNDACSY 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,202,170
Number of Sequences: 59808
Number of extensions: 246112
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)