Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0769
         (577 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I2J2 Cluster: Peptide release factor, putative; n=3; ...    35   1.2  
UniRef50_UPI00006CE44A Cluster: hypothetical protein TTHERM_0160...    33   6.4  
UniRef50_Q9U0L6 Cluster: Putative uncharacterized protein PFD034...    32   8.4  

>UniRef50_Q8I2J2 Cluster: Peptide release factor, putative; n=3;
           Plasmodium|Rep: Peptide release factor, putative -
           Plasmodium falciparum (isolate 3D7)
          Length = 404

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 32  HDSRTYNNWYSIIGNHGTASRR--VPRIHYNALLMNLIKKKKNVSITNIILHSLQY 193
           H  RTYN  + +I +H T ++   +       +L+ LI KKK V   NII  +LQY
Sbjct: 325 HKIRTYNFLHDVIIDHITNTQYSGIQNFFKGHMLIQLINKKKQVFYQNIIDQTLQY 380


>UniRef50_UPI00006CE44A Cluster: hypothetical protein
           TTHERM_01601640; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_01601640 - Tetrahymena
           thermophila SB210
          Length = 731

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 23/66 (34%), Positives = 29/66 (43%)
 Frame = +1

Query: 79  RDRKPACPANSLQRFANEFNXXXXXRLYH*YHITQFTISCEYLIHRLTSRVSLFYSAVIG 258
           +D+KP   A  LQ   N  N          Y+IT FT   EY I  + S V+LF   +  
Sbjct: 461 QDQKPTTIAEDLQSVLNNKNLQTAFGSQGLYNITHFTDFYEYAIFWILSFVTLFQIGLCY 520

Query: 259 NSITLD 276
              TLD
Sbjct: 521 IGKTLD 526


>UniRef50_Q9U0L6 Cluster: Putative uncharacterized protein PFD0345c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFD0345c - Plasmodium falciparum
           (isolate 3D7)
          Length = 405

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 94  ACPANSLQRFANE--FNXXXXXRLYH*YHITQFTISCEYLIHRLTSRVSLFYSAV 252
           AC  N      NE  F      R Y+ YH  +F  SC + I +L   +S+FY  V
Sbjct: 270 ACFQNIFTNLFNEYMFLKKYLNRNYYAYHKLKFFFSCTHFIKKLRYLLSIFYDVV 324


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,219,745
Number of Sequences: 1657284
Number of extensions: 8070722
Number of successful extensions: 15080
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15077
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)