Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0768
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 0.79
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 1.8
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 26 3.2
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 26 3.2
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 26 4.2
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 5.6
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 7.3
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 7.3
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 9.7
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 28.3 bits (60), Expect = 0.79
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 70 TNGAAGIFLILFTGVMGSSLPCILGLTRATAFWVLIGC*PLTLGRLAKPILATFSFRS 243
T GAA ++ + +GV G +L I+G R ++ G +G KP++ F F S
Sbjct: 2859 TAGAASLYTGVRSGVRGLALQPIIGARRNGLPGLVKGLGKGLVGFTTKPLVGLFDFAS 2916
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 110 PVKSIKNIPAAPFVPTKSSLYN 45
PV++ K P+ P VP+KS L++
Sbjct: 73 PVEAFKTYPSTPAVPSKSVLFH 94
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 520 LNNFAIDSSGKSNSLEQRPCYQNVVDRNTHKYAKKSPIQQKWRS--AAAFFMNKTGEVDS 347
L NF ++++GK N P D + K + KS ++K + + AF K E+D+
Sbjct: 20 LQNFGVNTAGKENESTSLPRLPKSEDESIPKQSIKSKNKKKTQHFLSDAFESLKRQEIDT 79
Query: 346 S 344
+
Sbjct: 80 N 80
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 114 DGFLTAMHLRPNKSDSFLGSYRLLTTNPGTPRKADIGNFFIS 239
DG + +H+ PNK + +G + +T + GNF +S
Sbjct: 259 DGCIRLLHILPNKYERIIGQHSSRSTVDAVDVTTE-GNFLVS 299
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -2
Query: 251 KSSERNEKVANIGFARRPRVSGQQPIRTQKAVALVRPKMHGSEEPITPVKSIKNI 87
+S + V + G + + G PI+T A + P+M G++ + KS N+
Sbjct: 25 RSVWKGPNVVDFGVNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANV 79
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 5.6
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Frame = -3
Query: 547 KITLFGKLSLNNFAIDSSGKSNSLEQRPCYQNVVDRNTHKYAKKSPIQQKWRSAAAFFMN 368
+ TL G L +F DSS ++ +EQ + +V R I + S+ A MN
Sbjct: 911 RCTLRGML---DFDFDSS-QAIPIEQVEPWTEIVRRFCTGAMSYGSISMESHSSLAIAMN 966
Query: 367 KTGEVDSSGTTGRPSVNKLRRQNAGAVLAKAKLFESSSIN----HLNEMKKLPISALRGV 200
+ G ++G G R N + + K S +L++ +L I +G
Sbjct: 967 RLGGKSNTGEGGEDPARSQRLANGDTMRSAIKQIASGRFGVTSWYLSDADELQIKMAQGA 1026
Query: 199 -PG 194
PG
Sbjct: 1027 KPG 1029
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 19 DDILFVLHSLYSEDLVGTNGAAGIFLILFT 108
DD++ + SLYS+D + NG + LF+
Sbjct: 1475 DDVIDLNSSLYSDDFIPVNGKLHNVVKLFS 1504
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -2
Query: 203 RPRVSGQQPIRTQKAVALVRPKMHGSEEPITPVKSIKNIPAAPFVPTKSS 54
RP+ Q+P++T MHGS +P + +P PT S
Sbjct: 301 RPKNYPQKPVQTTPEAVHANGSMHGSLHSKSPSPAFTANRFSPAAPTTVS 350
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 212 SRYWQLFHFVQMIYRTRFE*FCFRKNCSGVLPPEFVHGRPSRRP 343
+R++ + HF+ + R F + V PP+F H RP
Sbjct: 112 ARHFMIEHFLSLFAFCRTILFSLLTSFLLVPPPQFFHSEAGERP 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,224
Number of Sequences: 5004
Number of extensions: 49550
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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