Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0768
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40771| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 29   3.3  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              28   4.4  
SB_53272| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              27   7.6  
SB_11477| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_40771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = -3

Query: 499 SSGKSNSLEQRP---CYQNV-VDRNTHKYAKKSPIQQKWRSAAA 380
           SS K   L++ P   C +++ +  N +K A+K+P QQ W+S AA
Sbjct: 162 SSQKRQKLDKTPLSACKRSLEMPENDNKAAEKAPTQQDWQSTAA 205


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/79 (18%), Positives = 36/79 (45%)
 Frame = -3

Query: 460 YQNVVDRNTHKYAKKSPIQQKWRSAAAFFMNKTGEVDSSGTTGRPSVNKLRRQNAGAVLA 281
           Y++++D+   KY      Q K+R       +K  ++D + +  R  ++K + +    +  
Sbjct: 258 YRDIIDKAQSKYRDIDKAQSKYRDIIDKEQSKYRDIDKAQSNYRDIIDKAQSKYRDIIEK 317

Query: 280 KAKLFESSSINHLNEMKKL 224
              + E++  N+ +  K L
Sbjct: 318 AQNIIENAQTNYRDIDKAL 336


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 454  NVVDRNTHKYAKKSPIQQKWRSAAAFFMNKTG 359
            N+ DRNTHK + +  + +  R +++F  N+ G
Sbjct: 1433 NIKDRNTHKESSRYNVSRCLRVSSSFIANEWG 1464


>SB_53272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 421 KKSPIQQKWRSAAAFFMNKTGEVDSSGTTGR 329
           K  P+ QKW   A      TG VD   TTGR
Sbjct: 257 KLKPLLQKWLEEADNNNGATGGVDKLATTGR 287


>SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 227 VANIGFARRPRVSGQQPIRTQKAVALVRPKMH 132
           +  +   +RP  SG++P  T K V LV   +H
Sbjct: 233 IKEVEIMKRPAQSGEKPFDTYKGVGLVNVPIH 264


>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 517  NNFAIDSSGKSNSLEQRPCYQNVVDRNTHKYAKKSPIQ 404
            +N A+DSS K    E  PC Q+        Y    P+Q
Sbjct: 956  SNVALDSSEKKGQTEGSPCVQSNGQETESHYPSLYPLQ 993


>SB_11477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 347 LWDDGKAVREQTQAAKRRSSSCESKIIRI*FDKSSERNEKVANIGF 210
           LWD G A R Q +    R   CE  +    F  +S+  + V   GF
Sbjct: 321 LWDSGSASRYQCRRKDARGKGCEDSV----FGGASDAIDLVRKYGF 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,967
Number of Sequences: 59808
Number of extensions: 363884
Number of successful extensions: 966
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)