Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0766
         (210 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      27   3.1  
SB_10586| Best HMM Match : RVT_1 (HMM E-Value=0.039)                   27   3.1  
SB_55160| Best HMM Match : 7tm_1 (HMM E-Value=7.10038e-42)             26   5.4  

>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 63   VFLSNFSYYRLHVHLF 110
            VF+S FSY+R+HV +F
Sbjct: 1113 VFMSVFSYHRVHVDVF 1128


>SB_10586| Best HMM Match : RVT_1 (HMM E-Value=0.039)
          Length = 590

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 114 QRTSERAGGNTKNYLKIPTNLIMFFKQA 31
           +R  +RAG  ++N    PTNL  F+K A
Sbjct: 208 RRRQQRAGVYSRNAPNSPTNLSSFYKDA 235


>SB_55160| Best HMM Match : 7tm_1 (HMM E-Value=7.10038e-42)
          Length = 417

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 135 CWIPIYEQRTSERAG-GNTKNYLKIPTNLIMFFKQA 31
           CWIP+Y   +  R+G G+  N   +  +L++F   A
Sbjct: 289 CWIPVYTVVSIIRSGLGDLTNAGSVFASLVIFLTSA 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,597,890
Number of Sequences: 59808
Number of extensions: 78505
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 16,821,457
effective HSP length: 48
effective length of database: 13,950,673
effective search space used: 292964133
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)