Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0765
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    29   0.69 
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    28   0.91 
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.8  
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar...    26   3.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   8.5  

>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 25/78 (32%), Positives = 35/78 (44%)
 Frame = +3

Query: 33  PFKHSILIIFKAKFVFKTSKKFLVFFLITNLTKIIF*QVTAFLSGSQYVTSYVWSWVVAI 212
           P  H+I+ I KA+F   +   FL + L TN    I       L GSQ +++     VVA 
Sbjct: 113 PGAHTIVEIVKARFGQASHAVFLFYALGTN----IIVSAMLLLGGSQAISAITGMHVVAA 168

Query: 213 SDGCSLSRVLWFPIILGG 266
             G  L   +W   + GG
Sbjct: 169 --GFLLPLGVWLYTVSGG 184


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 535 VKIWIRFNNVRLKVFMDGPPSFQVKLL 455
           +K W ++++ R K+F+  PP F+  LL
Sbjct: 587 LKAWTKYSDGRSKLFITAPPQFEFWLL 613


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 99  LVFFLITNLTKIIF*QVTAFLSGSQYVTSYVWSWVVAI 212
           LV FL+ +L  I+F   +A       +TS  WS V+ I
Sbjct: 369 LVMFLLYSLAPILFRMSSATFYNISLLTSDFWSLVIGI 406


>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
           factor|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 6/22 (27%), Positives = 17/22 (77%)
 Frame = +3

Query: 192 WSWVVAISDGCSLSRVLWFPII 257
           W+W + ++   ++++++WFP+I
Sbjct: 111 WNWTLWLTPPETIAKMVWFPLI 132


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -1

Query: 416  VKSNLYGVATAPLAANAGKLSNSIQI*VNFNAVEKLKN*AHKKETVESK*ASQDYGKPQN 237
            V S     +T  LAAN G  SNSI   +N  +   + + A+  ++V S  A    G P +
Sbjct: 821  VSSTTSSSSTTSLAANKGVNSNSITS-LNLESTSSVTSTAYTTDSVTSTTALTSQG-PSS 878

Query: 236  STERATVT 213
            S   ++++
Sbjct: 879  SVVSSSLS 886


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 442 PLTFSIALKLNQICMELQQ 386
           P+TFSIA K+   C +L+Q
Sbjct: 271 PITFSIASKILSCCKKLKQ 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,954
Number of Sequences: 5004
Number of extensions: 38788
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)