Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0765
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185...    28   5.0  
04_03_0463 - 16200690-16200986,16202010-16202258,16202562-162026...    28   5.0  
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070...    27   8.7  
02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419...    27   8.7  
01_06_1838 + 40235648-40235776,40236292-40236372,40237148-402372...    27   8.7  

>11_01_0240 +
           1852186-1852371,1854183-1854237,1854391-1856267,
           1856342-1856500,1856692-1856863,1856965-1857263,
           1857539-1857844
          Length = 1017

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 75  VFKTSKKFLVFFLITNLTKIIF*QVTAFLSGSQYVTSYVWSWVVAISD 218
           V+   +KF+ F L  N+  ++   V+A ++GS  +T+    WV  I D
Sbjct: 787 VYINIQKFVQFQLTVNIVALVINFVSACITGSAPLTAVQLLWVNMIMD 834


>04_03_0463 -
           16200690-16200986,16202010-16202258,16202562-16202697,
           16203150-16203368,16204137-16204515,16205010-16205253
          Length = 507

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 177 VTSYVWSWVVAISDGCSLSRVLWFPII 257
           V SYVWS+VV   +  +L+R+++  II
Sbjct: 227 VESYVWSYVVFYEEDSALARMIFTKII 253


>05_05_0338 +
           24204301-24206262,24206337-24206495,24206864-24207035,
           24207544-24207842,24208301-24208355,24208438-24208487,
           24208522-24208827
          Length = 1000

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 75  VFKTSKKFLVFFLITNLTKIIF*QVTAFLSGSQYVTSYVWSWVVAISD 218
           V+   +KF+ F L  N+  +I   V+A + GS  +T+    WV  I D
Sbjct: 735 VYLNIQKFVQFQLTVNIVALIVNFVSACIIGSAPLTAVQLLWVNMIMD 782


>02_01_0570 -
           4195409-4195443,4196245-4196333,4196539-4196630,
           4196726-4196833,4196984-4197118,4197211-4197256,
           4197358-4197458,4198285-4198422,4198503-4198601,
           4198740-4198856,4199195-4199356,4199734-4199793,
           4200371-4200538,4200608-4200718,4201401-4201499,
           4201579-4201644,4202407-4202490,4202563-4202605,
           4202684-4202739,4202817-4202925,4203442-4203524,
           4203842-4203925,4204311-4204382,4204462-4204539,
           4204633-4204716,4204806-4204876,4205943-4206012,
           4206495-4206626,4207168-4207284,4208185-4208367
          Length = 963

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 36  FKHSILIIFKAKFVFKTSKKFLVFFLITNLTKIIF*QVTAFLSGSQYVTSYVWSWVVAIS 215
           F   + ++   + V+   +KF+ F L  N+  +I   V A  SG+  + +    WV  I 
Sbjct: 711 FASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGNVPLNAVQLLWVNLIM 770

Query: 216 D 218
           D
Sbjct: 771 D 771


>01_06_1838 +
           40235648-40235776,40236292-40236372,40237148-40237267,
           40237399-40237527
          Length = 152

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 532 KIWIRFNNVRLKVFMDGPPSFQV 464
           KIW  F+ V  K+++D  P+F +
Sbjct: 71  KIWHNFHMVDFKIYVDNDPTFSI 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,712
Number of Sequences: 37544
Number of extensions: 231845
Number of successful extensions: 347
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)