Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0765
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 28   6.6  
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   8.8  
SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05)                   27   8.8  
SB_59505| Best HMM Match : Iso_dh (HMM E-Value=1.1)                    27   8.8  

>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/59 (20%), Positives = 31/59 (52%)
 Frame = -2

Query: 493 FMDGPPSFQVKLLRNTCPLTFSIALKLNQICMELQQRP*RQTQANFLTPYKFELTLTRS 317
           F+DG     + +++  CP++  +A++L  +  ++Q     +  +N L   + E+ + R+
Sbjct: 22  FVDGSCHTNINVVKGRCPVSHDMAIELAALMAQIQYGD-YKAHSNSLPSKRIEMVIARN 79


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
 Frame = +3

Query: 96   FLVFFLITNLTKIIF*QVTAFLSGSQYVTSYV-------WSWVVAISDGCS-LSRVLWF 248
            F++F L+  +  ++F     +  G +     V       WSWV  +  GCS  S VL+F
Sbjct: 1258 FMIFVLLCEILFVLFTVYFTYKQGKEIAREGVAYHFHEYWSWVELVLSGCSWTSIVLYF 1316


>SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05)
          Length = 292

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 299 AHKKETVESK*ASQDYGKPQNSTERATVTYSHNPAP 192
           A +  T E+  AS+D G+  N+   AT    H P+P
Sbjct: 157 ASRSNTSETNSASEDNGRKPNTITMATGNGIHRPSP 192


>SB_59505| Best HMM Match : Iso_dh (HMM E-Value=1.1)
          Length = 145

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
 Frame = -1

Query: 539 TSKDLDSLQ*CAIESFHGWAPKLSSE-----TSA*YVSVNVLDSVKVKSNLYGVATAPL- 378
           T ++    + C+I+  HG AP ++S+     T+    +V +L  +K+ S+   V  A L 
Sbjct: 48  TGQNFTLFRYCSIDQVHGTAPDIASQDKANPTALLLSAVMMLRHMKLNSHADAVEKAVLK 107

Query: 377 AANAGKLSNSIQI 339
             + GK   SI+I
Sbjct: 108 TISEGKTKESIKI 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,283,654
Number of Sequences: 59808
Number of extensions: 274088
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)