Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0765
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 551 HLVTTSKDLDSLQ*CAIESFHGWAPKL 471
           HL   S + DS+    ++S+  W P +
Sbjct: 94  HLTWKSSEFDSINSIRVKSYEIWVPDI 120


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 470 KAWGPIHENFQSHIIEANPNLY 535
           K W P++EN++S  + A    Y
Sbjct: 441 KTWLPVNENYKSLNLAAQKREY 462


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 509 CAIESFHGWAPKLSSETSA*YVSVNVLDSVKVKSNLYGVAT 387
           CA  +    A K+ +  +  Y + +VL   K   N+Y V T
Sbjct: 424 CAAHTDSSGAMKIVNMLNQLYTAFDVLTDPKKNPNVYKVET 464


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 509 CAIESFHGWAPKLSSETSA*YVSVNVLDSVKVKSNLYGVAT 387
           CA  +    A K+ +  +  Y + +VL   K   N+Y V T
Sbjct: 424 CAAHTDSSGAVKIVNMLNQLYTAFDVLTDPKKNPNVYKVET 464


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 272 K*ASQDYGKPQNSTERATVTYSH 204
           K A  D+ KP NS   +T+ YS+
Sbjct: 283 KTAEFDWNKPINSGFYSTIMYSN 305


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 272 K*ASQDYGKPQNSTERATVTYSH 204
           K A  D+ KP NS   +T+ YS+
Sbjct: 283 KTAEFDWNKPINSGFYSTIMYSN 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,079
Number of Sequences: 438
Number of extensions: 2689
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)