Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0765
(599 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74400.1 68414.m08619 pentatricopeptide (PPR) repeat-containi... 31 0.77
At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma m... 29 1.8
At5g57110.2 68418.m07131 calcium-transporting ATPase 8, plasma m... 29 3.1
At5g57110.1 68418.m07130 calcium-transporting ATPase 8, plasma m... 29 3.1
At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma mem... 28 4.1
At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma mem... 28 4.1
At2g20520.1 68415.m02397 fasciclin-like arabinogalactan-protein ... 28 5.4
>At1g74400.1 68414.m08619 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 domain of unknown
function
Length = 462
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 319 SRS*KTKHTKRRLLNQNEPPKIMGNHRTRLREQPSLI 209
++S K+ HT ++ L EP K + + R R R+ PS +
Sbjct: 26 TKSLKSNHTLKQYLESGEPIKALLDFRHRFRQSPSFV 62
>At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma
membrane-type / Ca2+-ATPase, isoform 4 (ACA4) identical
to SP|O22218 Calcium-transporting ATPase 4, plasma
membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4)
{Arabidopsis thaliana}
Length = 1030
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 36 FKHSILIIFKAKFVFKTSKKFLVFFLITNLTKIIF*QVTAFLSGSQYVTSYVWSWVVAIS 215
FK + + + V+ +KF+ F L N+ +I V+A ++GS +T+ WV I
Sbjct: 787 FKTIVNVARWGRAVYINIQKFVQFQLTVNVVALIINFVSACITGSAPLTAVQLLWVNMIM 846
Query: 216 D 218
D
Sbjct: 847 D 847
>At5g57110.2 68418.m07131 calcium-transporting ATPase 8, plasma
membrane-type / Ca(2+)-ATPase isoform 8 (ACA8) identical
to calcium-transporting ATPase 8, plasma membrane-type
SP:Q9LF79 from [Arabidopsis thaliana]
Length = 1074
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 36 FKHSILIIFKAKFVFKTSKKFLVFFLITNLTKIIF*QVTAFLSGSQYVTSYVWSWVVAIS 215
F + ++ + V+ +KF+ F L N+ ++ V A SG +T+ WV I
Sbjct: 823 FASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLTAVQLLWVNLIM 882
Query: 216 D 218
D
Sbjct: 883 D 883
>At5g57110.1 68418.m07130 calcium-transporting ATPase 8, plasma
membrane-type / Ca(2+)-ATPase isoform 8 (ACA8) identical
to calcium-transporting ATPase 8, plasma membrane-type
SP:Q9LF79 from [Arabidopsis thaliana]
Length = 1074
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 36 FKHSILIIFKAKFVFKTSKKFLVFFLITNLTKIIF*QVTAFLSGSQYVTSYVWSWVVAIS 215
F + ++ + V+ +KF+ F L N+ ++ V A SG +T+ WV I
Sbjct: 823 FASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLTAVQLLWVNLIM 882
Query: 216 D 218
D
Sbjct: 883 D 883
>At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA10)
identical to SP|Q9SZR1 Potential calcium-transporting
ATPase 10, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 10) {Arabidopsis thaliana};
similar to SP|Q9LF79 Calcium-transporting ATPase 8,
plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
8) {Arabidopsis thaliana}
Length = 1069
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +3
Query: 36 FKHSILIIFKAKFVFKTSKKFLVFFLITNLTKIIF*QVTAFLSGSQYVTSYVWSWVVAIS 215
F+ + ++ + V+ +KF+ F L N+ ++ V A +G +T+ WV I
Sbjct: 827 FESVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISAGEVPLTAVQLLWVNLIM 886
Query: 216 D 218
D
Sbjct: 887 D 887
>At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA11)
identical to SP|Q9M2L4|ACAB_ARATH Potential
calcium-transporting ATPase 11, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis
thaliana}; strong similarity to calmodulin-stimulated
calcium-ATPase [Brassica oleracea] GI:1805654
Length = 1025
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 75 VFKTSKKFLVFFLITNLTKIIF*QVTAFLSGSQYVTSYVWSWVVAISD 218
V+ +KF+ F L N+ +I V+A ++GS +T+ WV I D
Sbjct: 797 VYINIQKFVQFQLTVNVVALIINFVSACITGSAPLTAVQLLWVNMIMD 844
>At2g20520.1 68415.m02397 fasciclin-like arabinogalactan-protein
(FLA6) identical to gi|13377780_gb_AAK20859
Length = 247
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 446 VSVNVLDSVKVKSNLYGVATAPLAANAGKLSNS 348
++V V+DSV + L+G T P A A K S S
Sbjct: 173 LAVYVVDSVLLPEELFGTKTTPTGAPAPKSSTS 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,654
Number of Sequences: 28952
Number of extensions: 196871
Number of successful extensions: 365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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