Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0763
         (483 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    39   0.051
UniRef50_A5IJX3 Cluster: Surface antigen (D15) precursor; n=2; T...    32   7.8  
UniRef50_A0PWU0 Cluster: Polyketide synthase Pks16_1; n=1; Mycob...    32   7.8  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 39.1 bits (87), Expect = 0.051
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +1

Query: 184 KICPLSFSPDLLSGSRFRS 240
           + CPLSFSPDLLSGSRFR+
Sbjct: 393 RCCPLSFSPDLLSGSRFRT 411


>UniRef50_A5IJX3 Cluster: Surface antigen (D15) precursor; n=2;
           Thermotoga|Rep: Surface antigen (D15) precursor -
           Thermotoga petrophila RKU-1
          Length = 711

 Score = 31.9 bits (69), Expect = 7.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 200 VSRRIFSVDRVFDLLVESGSTALGKVSVSNTSGFSPESTYT 322
           V RR+F  ++ F  ++  G+T      +   SG SP+ TYT
Sbjct: 261 VQRRLFEGEKAFKEILFHGNTIFTDQELLKASGLSPDQTYT 301


>UniRef50_A0PWU0 Cluster: Polyketide synthase Pks16_1; n=1;
           Mycobacterium ulcerans Agy99|Rep: Polyketide synthase
           Pks16_1 - Mycobacterium ulcerans (strain Agy99)
          Length = 550

 Score = 31.9 bits (69), Expect = 7.8
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 325 SRVGALGAKTGGVANTDLTKSSASR-FYQQIENAIH*EDPARNSV 194
           S VG  G ++GGVA   L  +SAS  F    E+A+H +D   N +
Sbjct: 455 SVVGIAGIRSGGVAAVRLATASASEGFVMVAESALHADDAESNRI 499


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,616,269
Number of Sequences: 1657284
Number of extensions: 8086916
Number of successful extensions: 20421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20420
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)