Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0763
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.0  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.0  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    25   7.9  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 433  SIITSVTRCGFVK---TKKTYYYFSYLL 359
            +I   ++ CGFV    ++  YYYFS+LL
Sbjct: 957  AISVILSECGFVLFNFSQPYYYYFSFLL 984


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 91  YRLFTLDQYLSRFHLIFNTYESDIIL 14
           + L+ LD YL   +   NTYE  +IL
Sbjct: 28  HSLYILDNYLKNANCSENTYEQALIL 53


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 222 TEKIRRETQWANLTSIRRQTLGKHHRQRLLS 130
           T  +RR   WA     R   LG+H R  L S
Sbjct: 254 TAGLRRRDSWAQAAPKRGMRLGEHKRGLLYS 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,520
Number of Sequences: 5004
Number of extensions: 35469
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)