Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0763
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 30 0.85
07_01_1151 - 10822616-10823863 30 1.1
05_03_0295 - 11830767-11831309,11831820-11831951,11832322-118323... 29 2.0
04_03_0164 + 12136693-12137589 29 2.0
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371 29 2.6
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190... 29 2.6
01_05_0031 + 17355791-17355920,17356341-17356675,17356762-17357109 29 2.6
09_03_0200 + 13452247-13453170 28 4.5
08_02_0397 + 16664990-16665874,16665961-16666005 28 4.5
08_01_0829 - 8051073-8051357,8051503-8051934 28 4.5
03_04_0038 - 16718024-16718368,16718455-16719339 27 6.0
01_02_0102 - 11148219-11148563,11148650-11149534 27 6.0
10_02_0179 - 6268449-6268508,6268594-6269406 27 7.9
04_03_0266 + 13648287-13649099,13649186-13649524 27 7.9
04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339 27 7.9
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 30.3 bits (65), Expect = 0.85
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -2
Query: 260 CFQILPTDRKRDPLRRSGEKLSGQILPQYAD--KRSGNTIDSAY 135
C D R+ LRR G SG+I+ +Y D SG TI +
Sbjct: 694 CVAYYRVDEDREELRRGGAVASGKIVTEYIDVEATSGETISGGW 737
>07_01_1151 - 10822616-10823863
Length = 415
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL*TRNFN 105
P +E+ D K DP R + E L +I+ + K N I +Y HLL +N
Sbjct: 208 PIKERSRTTFEFDGKHDPNRENPESLELKIMQERMYKIFSNAIVVSYSHLLPVMPYN 264
>05_03_0295 -
11830767-11831309,11831820-11831951,11832322-11832375,
11842285-11843169
Length = 537
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL 123
P +E+ D K DP R E L +I+ + K N I +Y HLL
Sbjct: 232 PIKEKSRTAFEFDGKHDPNREDPESLDFKIMKERMYKFFSNAIVVSYSHLL 282
>04_03_0164 + 12136693-12137589
Length = 298
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL 123
P +E+ D K DP R E L +++ + K N I +Y HLL
Sbjct: 232 PIKERSRTAFEFDGKHDPNREDPESLEFKVMKERMYKIFSNAIAVSYSHLL 282
>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
Length = 680
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL 123
P +E+ D K DP R E L +++ + K N I +Y HLL
Sbjct: 232 PIKERSRTAFEFDGKHDPNREDPESLEFKVMKERMYKIFSNAIVVSYSHLL 282
>11_03_0184 +
11317787-11318198,11318337-11318671,11318756-11319048,
11319125-11319483,11319549-11319748,11319823-11320012,
11320084-11320188,11320262-11320338,11320428-11320649
Length = 730
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL*TRNFN 105
P +E+ D K DP R + L +++ + K N I +Y HLL FN
Sbjct: 186 PIKERSRTAFEFDGKHDPNREDPDSLDFKVMKERMYKIFSNAIVVSYSHLLPVVPFN 242
>01_05_0031 + 17355791-17355920,17356341-17356675,17356762-17357109
Length = 270
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL*TRNFN 105
P +E+ D K DP R + L +++ + K N I +Y HLL FN
Sbjct: 92 PIKERSRTAFEFDGKHDPNREDPDSLDFKVMKERMYKIFSNAIVVSYSHLLPVVPFN 148
>09_03_0200 + 13452247-13453170
Length = 307
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL 123
P +E+ D K DP R + L +I+ + K N I +Y HLL
Sbjct: 232 PIKERSRTAFEFDGKHDPNREDPDSLDFKIMKERMYKIFSNAIVVSYSHLL 282
>08_02_0397 + 16664990-16665874,16665961-16666005
Length = 309
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL 123
P +E+ D K DP R + L +I+ + K N I +Y HLL
Sbjct: 232 PIKERSRTAFEFDGKHDPNREDPDSLDFKIMKERMYKIFSNAIVVSYSHLL 282
>08_01_0829 - 8051073-8051357,8051503-8051934
Length = 238
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL 123
P +E+ D K DP R E L +I+ + K N I Y HLL
Sbjct: 81 PIKERSRTAFEFDGKHDPNREDPESLEFKIMKERMYKILSNAIVVNYSHLL 131
>03_04_0038 - 16718024-16718368,16718455-16719339
Length = 409
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL*TRNFN 105
P +E+ D K DP R + L+ +++ + K N +Y HLL FN
Sbjct: 232 PIKERSRTAFEFDSKHDPNREDPDSLNFKVMKERMYKIFSNATVVSYSHLLPVVPFN 288
>01_02_0102 - 11148219-11148563,11148650-11149534
Length = 409
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL*TRNFN 105
P +E+ D K DP R + L+ +++ + K N I +Y H L FN
Sbjct: 232 PIKERSRTAFEFDGKHDPNREDPDSLNFKVMKERMYKIISNAIVVSYSHFLPVVPFN 288
>10_02_0179 - 6268449-6268508,6268594-6269406
Length = 290
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL 123
P +E+ D K DP R + L +++ + K N I +Y HLL
Sbjct: 208 PIKERSRTAFEFDGKHDPNREDPKSLEFKVMKERMYKIFSNAIVVSYSHLL 258
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL 123
P +E+ D K DP R + L +++ + K N I Y HLL
Sbjct: 208 PIKERSHTAFEFDGKHDPNREDLDSLDFKVMKERIYKIFSNAIVIGYSHLL 258
>04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339
Length = 503
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -2
Query: 275 PYQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGNTIDSAYCHLL 123
P +E+ + D K DP R + L +I+ + K N I +Y H L
Sbjct: 232 PIKERSRTVFEFDGKHDPNREEPDSLDFKIMKERMCKIFSNAIVVSYSHQL 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,181,847
Number of Sequences: 37544
Number of extensions: 204698
Number of successful extensions: 512
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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