Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0763
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     29   2.7  
SB_15676| Best HMM Match : ResIII (HMM E-Value=4.5)                    28   3.5  
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)                   27   6.1  
SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)             27   6.1  

>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 228 AFSICW*NLE-ALLLVRSVLATPPVLAPR 311
           AF ICW  +  ALL+VR+++ + P++A R
Sbjct: 364 AFLICWLPVSVALLIVRAIVGSVPIIAAR 392


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 303  LKPEVLLTLTLPRAVLPDSTNRSKTRSTE-KIRRETQWANLTSIRRQTLGKH 151
            ++ E LL L   RA   +S N  +    E K+R E   ++L ++RRQ  G+H
Sbjct: 969  IRDECLLLLDSQRA---ESNNEDERNQIERKLREEQHQSDLEALRRQLEGEH 1017


>SB_15676| Best HMM Match : ResIII (HMM E-Value=4.5)
          Length = 349

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 196 LSFSPDLLSGSRFRSVGRIWKHCSW 270
           + F PD     R+R  GR WK+  W
Sbjct: 270 IRFDPDPSVAHRYRKQGRPWKYAGW 294


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -1

Query: 279 LTLPRAVLPDSTNRSKTRSTEKIRRETQWANL---TSIRRQTLGKHHRQ 142
           L LP+ + PDST   +  S E  + E  +  L    S+  +T G H++Q
Sbjct: 329 LNLPKHLSPDSTPAQRKPSEELAQFEPTFQELKKEISVLEKTFGPHNKQ 377


>SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)
          Length = 537

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +2

Query: 122 IANDNKRCLWCFPSVCLRIEVRFAH*VSRRIFSVDRVFDLLVESGSTALGKVSVSNT 292
           IA+ +K C+  FP +  RI VR    +  RI   + + +  V+S  TAL K   ++T
Sbjct: 457 IASISKLCIQGFPKIRPRIRVRARSPIYPRI---NGIIESQVKSVKTALAKAKKTHT 510


>SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)
          Length = 487

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -1

Query: 276 TLPRAVLPDSTNRSKTRSTEKIRRETQWANLTSIRRQT 163
           TL   V P  T RS+TR+     RET+  N +SI R+T
Sbjct: 210 TLRSCVRPGMTLRSRTRNDSSTPRETR--NDSSITRET 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,410,340
Number of Sequences: 59808
Number of extensions: 245017
Number of successful extensions: 576
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)