Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0763
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U12964-1|AAL02497.1|  465|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical
           protein F25C8.1 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 272 YQEQCFQILPTDRKRDPLRRSGEKLSGQILPQYADKRSGN 153
           YQ Q ++ILP   K    R +GE+L    L    D R GN
Sbjct: 333 YQTQQYRILPYIAKTIAFRMAGEELQQAFLNISKDLRQGN 372


>U12964-1|AAL02497.1|  465|Caenorhabditis elegans Hypothetical
           protein F26F4.5 protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 279 LTLPRAVL-PDSTNRSKTRSTEKIRRETQWANLTSIRRQTLGKHHRQRLLSFAMNEKFQ 106
           L L  AVL  D   R     ++ I  E  W NLTS  + TL    R+ +L   + EK +
Sbjct: 300 LILKEAVLRKDEAERQLETISKSIYDEDDWVNLTSQHKNTL----RRNVLLMWVQEKLE 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,215,314
Number of Sequences: 27780
Number of extensions: 192781
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)