Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0763
(483 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 23 1.7
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 23 1.7
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 23 2.3
M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee homeobox-... 23 2.3
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 23 2.3
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 23 2.3
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 4.0
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 4.0
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 21 5.2
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 21 5.2
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 6.9
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 23.0 bits (47), Expect = 1.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 228 AFSICW*NLEALLLVRSVLATPPVL 302
AF +CW L LVR L P +
Sbjct: 380 AFIVCWLPFFVLALVRPFLKNPDAI 404
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 23.0 bits (47), Expect = 1.7
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -1
Query: 252 DSTNRSKTRSTEKIRRETQWANLTSIRRQTLGKHHRQRLLSFAMNEKF 109
+S S ST+ R A I+ Q + + R+R + ++NE F
Sbjct: 226 ESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSLNEAF 273
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 22.6 bits (46), Expect = 2.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 121 EREISIWFLNYRL 83
ER+I IWF N R+
Sbjct: 49 ERQIKIWFQNRRM 61
>M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H90. ).
Length = 74
Score = 22.6 bits (46), Expect = 2.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 121 EREISIWFLNYRL 83
ER+I IWF N R+
Sbjct: 49 ERQIKIWFQNRRM 61
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 22.6 bits (46), Expect = 2.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 121 EREISIWFLNYRL 83
ER+I IWF N R+
Sbjct: 49 ERQIKIWFQNRRM 61
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 22.6 bits (46), Expect = 2.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 121 EREISIWFLNYRL 83
ER+I IWF N R+
Sbjct: 311 ERQIKIWFQNRRM 323
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 4.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 211 PARNSVGKSYLNTQTNARETP*TALIVICYEREISIW 101
PAR S+G + L T +L + Y + I IW
Sbjct: 271 PARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDIW 307
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 4.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 211 PARNSVGKSYLNTQTNARETP*TALIVICYEREISIW 101
PAR S+G + L T +L + Y + I IW
Sbjct: 271 PARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDIW 307
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.4 bits (43), Expect = 5.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +2
Query: 221 VDRVFDLLVESGSTALGKVSVSNTSGFSPEST 316
+D++FD+ + + L S +T+G P T
Sbjct: 358 LDKIFDIATKENAMLLSGRSQKSTTGPPPGPT 389
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.4 bits (43), Expect = 5.2
Identities = 8/39 (20%), Positives = 22/39 (56%)
Frame = -3
Query: 136 IVICYEREISIWFLNYRLFTLDQYLSRFHLIFNTYESDI 20
+++ YE+ +++ + L ++ +YL H+ T+ S +
Sbjct: 306 LMVFYEKSLALAAFSLMLTSILRYLQELHVDAPTWISSV 344
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.0 bits (42), Expect = 6.9
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = -3
Query: 211 PARNSVGKSYLNTQTNARETP*TALIVICYEREISIWFLNYRLF 80
PAR ++G + L T +L + Y + I +W + +F
Sbjct: 243 PARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVF 286
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,998
Number of Sequences: 438
Number of extensions: 2636
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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