Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0761
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 160 2e-40
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 77 2e-15
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 76 6e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 74 2e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 58 9e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 50 4e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 48 2e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 48 2e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.001
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.5
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 6.0
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 26 6.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.0
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.0
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 26 6.0
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 160 bits (388), Expect = 2e-40
Identities = 73/83 (87%), Positives = 78/83 (93%)
Frame = -3
Query: 516 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 337
L N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTF 352
Query: 336 QQMWISKQEYDESGPSIVHRKCF 268
QQMWISKQEYDESGP IV+RKCF
Sbjct: 353 QQMWISKQEYDESGPGIVYRKCF 375
Score = 70.5 bits (165), Expect = 2e-13
Identities = 34/53 (64%), Positives = 37/53 (69%)
Frame = -1
Query: 668 PTGQVIHYGKRKIPLPRGSLSNPSFLGMEACGIHETTYNSIMKCDVDIRKDLY 510
P GQVI G + P +L PS LG+E GIHE TYNSIMKCDVDIRKDLY
Sbjct: 243 PDGQVITIGNERFRAPE-ALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLY 294
Score = 39.5 bits (88), Expect = 5e-04
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -2
Query: 691 LEKSYELPRRVRSSTMGNERFRCPEALF 608
LEKSYELP + T+GNERFR PEALF
Sbjct: 236 LEKSYELPDG-QVITIGNERFRAPEALF 262
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 77.4 bits (182), Expect = 2e-15
Identities = 37/88 (42%), Positives = 60/88 (68%), Gaps = 6/88 (6%)
Frame = -3
Query: 516 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 346
L+ N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 345 STFQQMWISKQEYDESGP---SIVHRKC 271
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 75.8 bits (178), Expect = 6e-15
Identities = 35/83 (42%), Positives = 57/83 (68%)
Frame = -3
Query: 516 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 337
L N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 336 QQMWISKQEYDESGPSIVHRKCF 268
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -1
Query: 668 PTGQVIHYGKRKIPLPRGSLSNPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 507
P Q I G P L NP +G EA G+H + SI+ D+D+R LY+
Sbjct: 248 PDNQTITLGTECFSAPE-VLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYS 300
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 73.7 bits (173), Expect = 2e-14
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = -3
Query: 516 LVRNTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 343
L+ N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 342 TFQQMWISKQEYDESG 295
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
Score = 28.7 bits (61), Expect = 0.85
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 575 GIHETTYNSIMKCDVDIRKDL 513
G+HE Y SI+ CD ++R L
Sbjct: 323 GLHELVYQSILACDSELRSPL 343
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 58.4 bits (135), Expect = 9e-10
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Frame = -3
Query: 516 LVRNTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 370
L R VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 369 GGSILAS-LSTFQQMWISKQEYDESG 295
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = -1
Query: 674 TSPTGQVIHYGKRKIPLPRGSLSNPSFLGMEACGIHETTYNSIMKCDVDIRKDLY 510
T P G+VI G + P L P +G E G+ E +++I DVDIRK LY
Sbjct: 241 TLPDGRVIKVGSERYECPE-CLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLY 294
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 49.6 bits (113), Expect = 4e-07
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Frame = -3
Query: 519 GLVRNTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 382
GL +N VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 381 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 277
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = -3
Query: 516 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 337
L+ N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 336 QQMWISKQEYDESGPSIVHRK 274
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/78 (26%), Positives = 39/78 (50%)
Frame = -3
Query: 516 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 337
LV N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 336 QQMWISKQEYDESGPSIV 283
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = -3
Query: 516 LVRNTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 346
L + ++ GG +PG A +++ I + + I +I PP + ++ W G I +
Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588
Query: 345 STFQQMWISKQEYDESGPSIVHRK 274
++WI ++ G ++ K
Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 375 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 274
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +3
Query: 489 HRTIRCCVQVLTDVHVALHDGVICGLVDAASFHTQERGVGKRASGQRNLSFP 644
H+ R C Q D LHD + D+ +FH V + QR+ P
Sbjct: 350 HKPQRACSQKFLD-EFYLHDLPESNIHDSGNFHPIHSSVDNNSFSQRDFDSP 400
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 380 EYFLSGGAMILIFIVDGARAVISFCIRSAIPGYM--VVPPDN-TVLRTSPYGC 529
E+F+ + + V V + CI S +P ++ V+ P N VLR P GC
Sbjct: 55 EFFIFCLIPLFVIYVSSKVGVFTLCIASFLPSFVLHVISPINWDVLRRKP-GC 106
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 383 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 288
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 450 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 340
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 492 RTIRCCVQVLTDVHVALH 545
R RCC Q L D+H +H
Sbjct: 82 RDFRCCGQTLEDLHQLIH 99
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 493 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 314
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 313 GV 308
V
Sbjct: 534 AV 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,289
Number of Sequences: 5004
Number of extensions: 65254
Number of successful extensions: 218
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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