Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0760
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    28   1.1  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.0  

>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 464 EKNNSVHSFGFSF*GVSRIAEGRSHIHTSLV*YQPVSQ 351
           E NNS+H+F F    V    +GR  +H   +   PVSQ
Sbjct: 52  ELNNSLHNFDFKIKRVQDQLDGRLTLHFQNLSGDPVSQ 89


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 176 WREYGDGFLVLKFTSCHHSFSFEYTYGNHSFFVSLLCVLLRVKL 307
           WRE  D FLV + T   + F  +       F  S+L + L + L
Sbjct: 139 WRETLDSFLVWRHTCLRYPFGMQQMELLVDFSFSILLIFLGMNL 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,952
Number of Sequences: 5004
Number of extensions: 55651
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)