Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0759
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 134 1e-32
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 133 1e-32
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 1.0
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 1.8
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 26 4.1
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 7.2
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 9.5
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 9.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 9.5
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 134 bits (323), Expect = 1e-32
Identities = 77/163 (47%), Positives = 94/163 (57%), Gaps = 7/163 (4%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGK 198
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI NGA QKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRSASISVL------SMSSTPSADKTSLRESKRMRG 360
TG VYNVT ++GV++ K Y ++V S D+ E+KR
Sbjct: 61 TGVVYNVTQSSVGVLIYK-VVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKR--- 116
Query: 361 Y*RKPRLHGKTVNLKRQPAPPKAVHIVS-GTEKPVLLAPIPYE 486
++ + GKTV L+RQPAPP H VS +PV L P+ Y+
Sbjct: 117 --KEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 133 bits (322), Expect = 1e-32
Identities = 77/163 (47%), Positives = 94/163 (57%), Gaps = 7/163 (4%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGK 198
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI NGA QKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRSASISVL------SMSSTPSADKTSLRESKRMRG 360
TG VYNVT ++GV++ K Y ++V S D+ E+KR
Sbjct: 61 TGVVYNVTQSSVGVLIYK-VVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKR--- 116
Query: 361 Y*RKPRLHGKTVNLKRQPAPPKAVHIVS-GTEKPVLLAPIPYE 486
++ + GKTV L+RQPAPP H VS +PV L P+ Y+
Sbjct: 117 --KEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 131 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 15
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 277 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLHGKTVNLKRQPAPPKAVHIVSGTEK 456
SAS S S++S+ S D ++ +R R RKP + T+ KR P + K
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEIVKPTLR-KRGRKPKNISTLEHDKSK 114
Query: 457 PVL 465
PV+
Sbjct: 115 PVI 117
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -3
Query: 213 VHATCLSMVYFVWHTLLKCTIAYDVYNVSNFVHFHVRGERNSS 85
+ + C V H +K T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 7.2
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Frame = +3
Query: 90 YSALHVHESVQSWRHCRHHRQWCISKGYATQSIPWKDRSRVQRDCSCSRCDCQQAVRGRI 269
+ L H SW + R+ C +KGY PW + D A + R+
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDAYILNYLTDQSDAEKNRV 258
Query: 270 IPKRINIRVEHVKHS-KCRQDFLKRVKENE 356
R +E +K S K L R +NE
Sbjct: 259 TKIRKEF-IEMLKSSDKIHSYTLWRTVKNE 287
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 298 SMSSTPSADKTSLRE 342
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -3
Query: 183 FVWHTLLKCTIAYDVY 136
+++HT KC+I YD++
Sbjct: 278 YMFHTEFKCSILYDIW 293
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 373 PRLHGKTVNLKRQPAPPK 426
PRL GK+ + P+PPK
Sbjct: 468 PRLSGKSASRNHVPSPPK 485
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,435
Number of Sequences: 5004
Number of extensions: 45208
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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