Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0759
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 126 1e-29
10_08_0310 - 16669565-16669822,16670558-16670794 123 1e-28
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 30 1.3
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 29 1.8
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 29 1.8
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 3.1
05_03_0658 + 16711117-16712337 28 4.1
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 5.4
04_04_0947 - 29583775-29583931,29584030-29584256 27 7.2
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 7.2
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808... 27 7.2
02_01_0030 - 183836-183903,183986-184453,184526-184604,184698-18... 27 7.2
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 27 9.5
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 126 bits (303), Expect = 1e-29
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGK 198
M G R TRDLFAR FR G IPL+TY++ YK+GD VD+ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRS-ASISVLSMSSTPSADKTSLRESKRMRGY*RKP 375
TGRV+NVT A+GV +NK+ + R + V + + ++ LR+ K +
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQ-LKADA 119
Query: 376 RLHGKTVNLKRQPAPPKAVHIVSGTEKPVLLAPIPYEFV 492
+ G+ ++ KRQP PK +V G + PIPY+ V
Sbjct: 120 KARGEVISTKRQPEGPKPGFMVEGATLET-VTPIPYDVV 157
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 123 bits (296), Expect = 1e-28
Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGK 198
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD+ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRS-ASISVLSMSSTPSADKTSLRESKRMRGY*RKP 375
TGRV+NVT A+GV +NK+ + R + V + + ++ LR+ K +
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQ-LKADA 119
Query: 376 RLHGKTVNLKRQPAPPKAVHIVSGTEKPVLLAPIPYEFV 492
+ G+ ++ KRQP PK +V G + PIPY+ V
Sbjct: 120 KARGEVISTKRQPQGPKPGFMVEGATLET-VTPIPYDVV 157
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 73 FRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGKTGRVYNVTAHALG 237
F T G IP Y+ G + +I +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
>03_02_0955 - 12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 279 RINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAARQDRQPEETASSP 422
++N+ + H K S R ++ E ER A+AA + PEE A P
Sbjct: 1207 KVNL-LRHAKRSVARDFKIQSKDELERNSTAARAASSENMPEEDAEGP 1253
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/39 (23%), Positives = 27/39 (69%)
Frame = +3
Query: 303 VKHSKCRQDFLKRVKENERLLKEAKAARQDRQPEETASS 419
++ +KCRQD++ VK++ +L+++ A + ++ ++ + +
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDAKNEPKKRQKRSKN 39
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 126 WRHCRHHRQWCISKGYATQSIPWKDRSRVQRDCS 227
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>05_03_0658 + 16711117-16712337
Length = 406
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = -3
Query: 258 EPLVDNHTESMSSHVVHATCLSMVYFVWHTLLKCTIAYDVYNVSNFVHFHVRGERNSSMC 79
EP + + M S+ + M VW + + I DV + + F++ H+R R C
Sbjct: 270 EPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEAC 329
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 126 WRHCRHHRQWCISKGYATQSIPWKDRSRVQRD 221
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>04_04_0947 - 29583775-29583931,29584030-29584256
Length = 127
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 315 KCRQDFLKRVKENERLLKEAKAARQDRQPEETASSP 422
+CRQ+ ++ + E+ K+ A Q+RQ ++ AS P
Sbjct: 85 ECRQEQIEIDEAREQRSKQTGRAEQERQRQQKASHP 120
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 268 LYRSASISVLSMSSTPSADKTSLRESKRM 354
+Y+SA++ V + SS P+ADK + + ++M
Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438
>03_02_0394 -
8081172-8081330,8082015-8082134,8082223-8082271,
8083193-8083371,8083583-8083852,8084480-8084631,
8085694-8085715,8086314-8086430
Length = 355
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 301 MSSTPSADKTSLRESKRMRGY*RKPRLHGKTVNLKRQPAPPKAVHI 438
+ S PS+ T+ RES ++ + +P T ++ P PKAV +
Sbjct: 58 IKSNPSSPLTTQRESHKVSTHLVRPSASYSTQASEQNPKEPKAVQV 103
>02_01_0030 -
183836-183903,183986-184453,184526-184604,184698-185183
Length = 366
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 73 FRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGKTGRVYNVTAHALG 237
F T G IP Y+ G + +I +G + G PHK+ R+Y++ + A+G
Sbjct: 114 FSTDGEIP-------YREGQSIGVIPDGIDKNGKPHKL------RLYSIASSAIG 155
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +3
Query: 324 QDFLKRVKENERLLKEAK---AARQDRQPEETASSP*SCP 434
QD K++K + RLLKEA+ A D Q E+++ P S P
Sbjct: 230 QDKEKQLKRDYRLLKEARKQSGASWDNQRPESSAPPESPP 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,022,450
Number of Sequences: 37544
Number of extensions: 320159
Number of successful extensions: 1005
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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