Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0759
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      130   9e-31
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)                    30   1.4  
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)                    30   1.4  
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)                    29   1.8  
SB_58538| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16)                    29   2.4  
SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)               29   2.4  
SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)                      29   3.2  
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   7.3  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               27   7.3  
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)           27   9.7  
SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22)                   27   9.7  
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                27   9.7  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score =  130 bits (313), Expect = 9e-31
 Identities = 58/79 (73%), Positives = 67/79 (84%)
 Frame = +1

Query: 19  MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGK 198
           MTN+KGYRRGTR +F+++FR  G   LSTY+K YKVGDIVD+  NGA QKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482

Query: 199 TGRVYNVTAHALGVIVNKR 255
           TGRVYNVT  ALGV+VNK+
Sbjct: 483 TGRVYNVTKRALGVVVNKQ 501


>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
          Length = 305

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 394 VNLKRQPAPPKAVHIVSGTEKPVLLAPIPYE 486
           VN  +   PP A + ++  ++PVL  P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160


>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
          Length = 403

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 216 RDCSCSRCDCQQAVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERL 362
           RDC+CS+C      R R+   R+ I  +  K ++ R+ + +R  EN RL
Sbjct: 44  RDCTCSKCQL-ITERQRVTAARVAILRQQRKSAELREKY-QREMENVRL 90


>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
          Length = 528

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
 Frame = +3

Query: 123 SWRHC--RHHRQWCISKGYATQSIP--WKDRSRVQRDCSCSRCDCQQAVRG--RIIPKRI 284
           SWR    +   ++ I + +  +  P  WK++  ++ +     C  Q+  +   + +P + 
Sbjct: 315 SWRDLFIKKFGKFIIDQSFYNRLTPTQWKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ- 373

Query: 285 NIRVEHVKHSKCRQDFLKRVKENERLL 365
           + ++  ++ SKC Q+ L   KEN RL+
Sbjct: 374 SAKITCLRISKCSQNLLASAKENSRLV 400


>SB_58538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 184 VYHGKTGRVYNVTAHALGV-IVNKRFAEGLYRSASISVLSMSSTPSAD 324
           V HGK   +  VTAHA    +   + AEG  RS  I   ++++  SAD
Sbjct: 28  VIHGKRSHL-GVTAHASEYQLTQNKIAEGRQRSRRIDYKALNNVSSAD 74


>SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16)
          Length = 453

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 294 VEHVKHSKCRQDFLKRVKENERLLKEAKAAR--QDRQPEETASSP 422
           +E   H K +QD L R+   E+  K+A   R   DR P++  S P
Sbjct: 273 MERALHEKQKQDELDRLAAEEKSRKKAMTDRAIHDRLPQQVKSPP 317


>SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)
          Length = 218

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
 Frame = +3

Query: 87  NYSALHVHESVQSWRHCRHHRQWCISKGYATQSIP--WKDRS-RVQRDCSCSRCDCQQAV 257
           N  A+ + ESV+SWR     R++   +  + +  P    DRS +V       RCD Q   
Sbjct: 85  NPDAMLLRESVRSWRE-NIPRKYSDLRPTSLKISPSCVPDRSEKVGISFMSGRCDMQYHG 143

Query: 258 RGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAARQDR 395
             R +P+ +   V  +  S+ R+  +  V    R L+E   + +DR
Sbjct: 144 ISRPVPESV-FEVTRIHQSRRRKRRVNHVTRAWRRLREGVRSLRDR 188


>SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 3   NTRLEDDELQGLPPRHQGLVRSQVPHTWNYSALHVHESV--QSWRHC 137
           NTR E+ EL  L PR QGL +      W    L +H +    S R+C
Sbjct: 472 NTRGEERELCLLLPRRQGLQQIPTLELWEKRNLKIHRNSLRSSARNC 518


>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
          Length = 271

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 276 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAARQDR 395
           +RI   ++H ++  K +QDF+  +KE  RL +E+++    R
Sbjct: 39  ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGASTR 79


>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 33  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRH 134
           G+   H G+ R+    TWNYS +  + S  +W +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNY 162



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 33  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRH 134
           G+   + G++R+    TWNYS +  + S  +W +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNY 120


>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 33  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRH 134
           G+   H G+ R+    TWNYS +  + S  +W +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNY 162



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 33  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRH 134
           G+   + G++R+    TWNYS +  + S  +W +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNY 120


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +3

Query: 132  HCRHHRQWCISKGY-ATQSIPW--KDRSRVQRDCSCSRCDC 245
            HC+ H Q      + AT+ +PW  KD S   R C  + C C
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFC 1315


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 380 SLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDAL--RYNPSANRLLTITPRA*AVTLYT 207
           S+ F +   I  D+LK  L +  +     TD++ +  +YN + + LL    +    T+  
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286

Query: 206 RPVFPWY 186
           RP  PW+
Sbjct: 287 RPRLPWF 293


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 153 IAYDVYNVSNFVHFHVRGERNSSMCAEPASEQVPGAAAVTLGVRHLRA 10
           I +  YN+ N+ +       N    A   S  + G A  TLGVR L +
Sbjct: 785 IRFRWYNLLNYSYLSPLKTLNKGQMASAVSPNLMGVAVETLGVRTLES 832


>SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)
          Length = 930

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 255 PLVDNHTESMSSHVVHATCLSMVYFVWHTLLKCTIAYDVYN 133
           P  D   ES  +HVV  T +S++YF     L  ++   V N
Sbjct: 750 PSPDKDPESYPAHVVIFTIMSIIYFTIGLALVSSVLLSVRN 790


>SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22)
          Length = 767

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 506 IGLYATNSYGIGASKTGFSVPLTMWTALGGAGCLFRLTV 390
           I L A + +   A  +GF VP T WT  G    +F  T+
Sbjct: 335 ITLKAGSPFTFTAKASGFPVPDTYWTKEGSREAIFSSTL 373


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 409 QPAPPKAVHIVSGTEKPVLLAPIPYEFVA*SP 504
           QP  P  V I   +  P +++P P +F+A SP
Sbjct: 198 QPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSP 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,219,677
Number of Sequences: 59808
Number of extensions: 366021
Number of successful extensions: 1084
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)