Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0759
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    27   0.16 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.86 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.86 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 10/52 (19%), Positives = 21/52 (40%)
 Frame = -3

Query: 210 HATCLSMVYFVWHTLLKCTIAYDVYNVSNFVHFHVRGERNSSMCAEPASEQV 55
           H   L  V      + KCT+ ++ +     +  H++   +SS+   P    +
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 114 SVQSWRHCRHHRQWCISKGYATQS 185
           SV  ++H R HR + +++ Y   S
Sbjct: 24  SVAGYKHSRRHRDFTVAESYDASS 47


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +1

Query: 247 NKRFAEGLYRSASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLHGKTVNLKRQPAPP 423
           +++  E   R  S+    ++ TP+  +  LR ++  R   R P  H +T    R  +PP
Sbjct: 143 HEKLVESFPRGGSLPT-PVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKPRVLSPP 200


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 144 DVYNVSNFVHFHVRGERNSSMCAEPASEQVPGAAAVT 34
           ++YN S+ +  ++RGE  S+       + VP    +T
Sbjct: 376 NIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLT 412


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 162 KCTIAYDVYNVSNFV 118
           KC + YD+  +S+FV
Sbjct: 177 KCEVLYDIAPLSDFV 191


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 462  DGFLSSTDDVDSFRGSW 412
            DG  SS  D  S  GSW
Sbjct: 1064 DGITSSGSDSGSSNGSW 1080


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,082
Number of Sequences: 438
Number of extensions: 3002
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)