Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0759
(536 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 130 4e-31
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 130 4e-31
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 129 1e-30
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 129 1e-30
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 37 0.010
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 31 0.64
At3g51650.1 68416.m05664 expressed protein 29 1.5
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 2.0
At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 2.6
At3g51640.1 68416.m05663 expressed protein 29 2.6
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 3.4
At5g25320.1 68418.m03004 ACT domain-containing protein contains ... 28 4.5
At5g63320.1 68418.m07946 expressed protein 27 6.0
At5g07480.1 68418.m00856 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 6.0
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 6.0
At1g54926.1 68414.m06272 hypothetical protein 27 6.0
At5g66190.1 68418.m08338 ferredoxin--NADP(+) reductase, putative... 27 7.9
At3g13190.2 68416.m01651 myosin heavy chain-related contains wea... 27 7.9
At3g13190.1 68416.m01650 myosin heavy chain-related contains wea... 27 7.9
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 130 bits (315), Expect = 4e-31
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGK 198
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRS-ASISVLSMSSTPSADKTSLRESKRMRGY*RKP 375
TGR++NVT A+GV VNK+ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDE-LKAAA 119
Query: 376 RLHGKTVNLKRQPAPPKAVHIVSGTEKPVLLAPIPYEFV 492
+ +G+T++ KRQP PK +V G + PIPY+ V
Sbjct: 120 KANGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 130 bits (315), Expect = 4e-31
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGK 198
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRS-ASISVLSMSSTPSADKTSLRESKRMRGY*RKP 375
TGR++NVT A+GV VNK+ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDE-LKAAA 119
Query: 376 RLHGKTVNLKRQPAPPKAVHIVSGTEKPVLLAPIPYEFV 492
+ +G+T++ KRQP PK +V G + PIPY+ V
Sbjct: 120 KANGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 129 bits (311), Expect = 1e-30
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGK 198
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRS-ASISVLSMSSTPSADKTSLRESKRMRGY*RKP 375
TGR++NVT A+GV VNK+ + R + V + + A++ LR+ K+
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRK-KQNDVLKADA 119
Query: 376 RLHGKTVNLKRQPAPPKAVHIVSGTEKPVLLAPIPYEFV 492
+ G+T++ KRQP PK +V G + PIPY+ V
Sbjct: 120 KARGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 129 bits (311), Expect = 1e-30
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Frame = +1
Query: 19 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGK 198
M G R TRDLFAR FR G IPLSTY++ +KVGD VD+ NGA KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 199 TGRVYNVTAHALGVIVNKRFAEGLYRS-ASISVLSMSSTPSADKTSLRESKRMRGY*RKP 375
TGR++NVT A+GV VNK+ + R + V + + A++ LR+ K+
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRK-KQNDVLKADA 119
Query: 376 RLHGKTVNLKRQPAPPKAVHIVSGTEKPVLLAPIPYEFV 492
+ G+T++ KRQP PK +V G + PIPY+ V
Sbjct: 120 KARGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +1
Query: 169 GMPHKVYHGKTGRVYNVTAHALGVIVNKRFAEGLYRSASISVLSMSSTPSADKTSLRESK 348
G P K Y+G GR+ AHAL NK + L+R L+ P AD+ S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWK--PCADQRSWKPSD 239
Query: 349 RMRGY 363
GY
Sbjct: 240 GKNGY 244
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 30.7 bits (66), Expect = 0.64
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 118 YKVGDIVDIIGNGAFQKGMPHKVYHGKTGRVYNVTAHALGVIVN 249
Y+ G V +I +G + G PHKV R+Y++ + ALG + N
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
>At3g51650.1 68416.m05664 expressed protein
Length = 826
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +3
Query: 195 KDRSRVQRDCSCSRCDCQQAVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEA 374
K ++R++++ S Q+ R++ +R +R E ++ KC + F KE + KEA
Sbjct: 262 KRQARLEKEHSEEEERKQREEVARLVEERRRLRDEILEAEKCSK-FSVAAKEKDT--KEA 318
Query: 375 KAARQDRQPEETASS 419
+ RQ+R+ E +S
Sbjct: 319 EKKRQERRKERDRAS 333
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 144 DVYNVSNFVHFHVRGERNSSM 82
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to Flavonol synthase (EC
1.14.11.-) (FLS) from Lisianthus russellianus] {Eustoma
grandiflorum} [SP|Q9M547], Leucoanthocyanidin
dioxygenase (LDOX) (Leucoanthocyanidin hydroxylase)
(Anthocyanidin synthase) from Malus spp. [SP|P51091];
contains Pfam profile PF03171: oxidoreductase,
2OG-Fe(II) oxygenase family
Length = 349
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 124 VGDIVDIIGNGAFQKGMPHKVYHGKTGRVYNVT 222
VGD ++++ NG ++ + V +GK R+Y T
Sbjct: 266 VGDTMEVMSNGIYKSPVHRVVLNGKKERIYVAT 298
>At3g51640.1 68416.m05663 expressed protein
Length = 826
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/75 (26%), Positives = 39/75 (52%)
Frame = +3
Query: 195 KDRSRVQRDCSCSRCDCQQAVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEA 374
K ++R++++ S Q+ R++ +R +R E ++ KC + V E+ KEA
Sbjct: 262 KRQARLEKEHSEEEERKQREEVARLVEERRRLRDEILEAEKCSK---LSVAAKEKDTKEA 318
Query: 375 KAARQDRQPEETASS 419
+ RQ+R+ E +S
Sbjct: 319 EKKRQERRKERDRAS 333
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 279 RINIRVEHVKHSKCRQDFLKRVKENERL 362
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At5g25320.1 68418.m03004 ACT domain-containing protein contains
Pfam ACT domain PF01842
Length = 500
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 156 CISKGYATQSIPWKDRSRVQRDCSCSRCDCQQAV 257
C +GY+ ++ KDR R+ D C+ D Q +
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQYVI 324
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 321 RQDFLKRVKEN-ERLLKEAKAARQDRQ 398
R++F KR++E ERL EAKAA + R+
Sbjct: 103 REEFEKRLREEKERLQAEAKAAEEARR 129
>At5g07480.1 68418.m00856 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavonol synthase 1
[SP|Q96330], 2-oxoglutarate-dependent dioxygenase -
Solanum chacoense, EMBL:AF104925; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 340
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 91 IPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKV-YHGKTGRVYNVTAHALGV 240
+P T + +GD V+++ NG + K + HKV + + R+ + H+LG+
Sbjct: 241 VPQVTGVLKVHIGDHVEVLSNGLY-KSIVHKVTLNEEKTRISLASLHSLGM 290
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 285 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAARQ--DRQPEE 407
N+ ++ + CRQ F+K + E + R ++E KA Q QP++
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTHAQPDD 671
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 237 CDCQQAVRGRIIPKRINIRVEHVKHSK 317
CD + + R+ PK +I +H KH K
Sbjct: 59 CDLSEGCKNRMTPKAFHIISQHPKHHK 85
>At5g66190.1 68418.m08338 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455; identical to cDNA ferredoxin-NADP+
reductase precursor (petH) GI:5730138
Length = 360
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 73 FRTHGTIPLSTYMKVYKVGDIVDIIGNGAFQKGMPHKVYHGKTGRVYNVTAHALG 237
F T G +P Y+ G + +I G + G PHK+ R+Y++ + A+G
Sbjct: 108 FTTEGEVP-------YREGQSIGVIPEGIDKNGKPHKL------RLYSIASSAIG 149
>At3g13190.2 68416.m01651 myosin heavy chain-related contains weak
similarity to Myosin II heavy chain, non muscle
(Swiss-Prot:P05659) [Acanthamoeba castellanii]
Length = 316
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 318 CRQDFLKRVKENERLLKEAKAARQD 392
CR + LK ++ +ER +++ KAA QD
Sbjct: 232 CRDETLKTLEMSEREIEDIKAATQD 256
>At3g13190.1 68416.m01650 myosin heavy chain-related contains weak
similarity to Myosin II heavy chain, non muscle
(Swiss-Prot:P05659) [Acanthamoeba castellanii]
Length = 316
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 318 CRQDFLKRVKENERLLKEAKAARQD 392
CR + LK ++ +ER +++ KAA QD
Sbjct: 232 CRDETLKTLEMSEREIEDIKAATQD 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,736,686
Number of Sequences: 28952
Number of extensions: 247658
Number of successful extensions: 814
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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