Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0758
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0164 - 17893385-17893541,17893816-17893888,17894453-178946...    29   1.9  
05_02_0107 - 6667944-6668214,6668376-6668524,6668654-6668851,666...    28   4.5  
10_08_1060 - 22621537-22621665,22621767-22621961                       27   5.9  
09_04_0180 + 15367737-15367755,15368874-15369739                       27   5.9  

>03_04_0164 -
           17893385-17893541,17893816-17893888,17894453-17894612,
           17894724-17894835,17895241-17895338,17895789-17896209,
           17896398-17896549,17896914-17897122,17898000-17898087,
           17899448-17899708
          Length = 576

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 468 LETCRGYYGNVVLNSNICTSGVAGVGIYRGDSGGPLTINHQGKEWLIGVSSFVARD 301
           L    GY   +   + +C  GV  V I  G  GG L +    ++   GV + +ARD
Sbjct: 359 LSRSNGYLSELAAAAYVCNGGVQRVHIIDGTVGGSLLLELFTRD---GVGTMIARD 411


>05_02_0107 -
           6667944-6668214,6668376-6668524,6668654-6668851,
           6668989-6669250,6669378-6670327,6670907-6671022,
           6671121-6671280
          Length = 701

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = -3

Query: 435 VLNSNICTSGVAGVGIYRGDSGGPLTINHQGKEWLIGVSSFVARDGCELGFPSVFASVPS 256
           VL   +    ++G    RGDSG P+T      E L+ VS  +A D   L F S   ++P 
Sbjct: 283 VLGGLLSAYHLSGGDKARGDSGIPMTSKRANPERLLEVSKDLA-DRLLLAFTSSPTAIPL 341

Query: 255 S 253
           S
Sbjct: 342 S 342


>10_08_1060 - 22621537-22621665,22621767-22621961
          Length = 107

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 97  AKTELVNVKERKWLKPV*PFDNEM 26
           A  E  N ++R WLKP  P D E+
Sbjct: 57  ANAEKANKQKRLWLKPTFPVDGEL 80


>09_04_0180 + 15367737-15367755,15368874-15369739
          Length = 294

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +2

Query: 239 LDPGPEEGTLAKTDGKPNSQPSLATNELTPMSHSFPWWLIVNGPPESPR*IPTPA 403
           LDP P+  T  + D KP   P   TN + P     P       PP  P  IPTP+
Sbjct: 95  LDPEPKAETDPEADPKPGLDPEPDTN-VEPDLELEP-----EPPPPRPMPIPTPS 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,641,190
Number of Sequences: 37544
Number of extensions: 264046
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)