Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0758
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    28   0.059
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   0.96 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 0.059
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = -3

Query: 459 CRGYYGNVVLNSNICTSGVAGVGIYRGDSGGP-LTINHQGKEWL-IGVSSFVARDG 298
           C  YYGN+++N+ +C +   G    + DSGGP L  N + K  + IG+ S+ A  G
Sbjct: 323 CYKYYGNIMVNA-MC-AYAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECG 376


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 384 RGDSGGPLTINHQGKEWLIGVSSFVARDGCELGF 283
           + D GGPL++ ++ +    G S F    G E G+
Sbjct: 441 QSDDGGPLSLKNKVETTHSGTSLFRINLGIECGY 474


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 438 VVLNSNICTSGVAG 397
           VV+ + ICTSG+ G
Sbjct: 138 VVITAAICTSGIVG 151


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
          protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 17 VDCHFIVKWLDR 52
          +DC+F   W+DR
Sbjct: 53 MDCYFRQSWVDR 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,129
Number of Sequences: 438
Number of extensions: 3019
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)