Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0758
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17080.1 68416.m02179 self-incompatibility protein-related si...    30   0.93 
At1g56460.1 68414.m06493 PAPA-1-like family protein / zinc finge...    30   0.93 
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    29   1.2  
At3g10380.1 68416.m01244 exocyst complex component-related ident...    27   5.0  
At4g30200.3 68417.m04295 expressed protein contains weak similar...    27   6.6  
At4g30200.2 68417.m04294 expressed protein contains weak similar...    27   6.6  
At4g30200.1 68417.m04293 expressed protein contains weak similar...    27   6.6  
At1g31770.1 68414.m03899 ABC transporter family protein contains...    27   6.6  
At1g53000.1 68414.m05999 cytidylyltransferase family contains Pf...    27   8.7  
At1g22060.1 68414.m02759 expressed protein                             27   8.7  

>At3g17080.1 68416.m02179 self-incompatibility protein-related
           similar to S1 self-incompatibility protein GB:CAA52380
           [Papaver rhoeas] (Proc. Natl. Acad. Sci. U.S.A. 91 (6),
           2265-2269 (1994))
          Length = 134

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -3

Query: 471 SLETCRGYYGNVVLNSNICTSGVAGVGIYRGDSGGPLTINH--QGKEWLIGVSSFVARDG 298
           SLETC  ++  V+  S I +     V IY  D GG L + H  + +E  +G  S      
Sbjct: 3   SLETCLLFFVMVMFMSAIMSRASTSVVIY-NDLGGGLPLRHHCKSREDDLGYQSLAPGRS 61

Query: 297 CELGF-PSVF 271
              GF P +F
Sbjct: 62  WSFGFTPDIF 71


>At1g56460.1 68414.m06493 PAPA-1-like family protein / zinc finger
           (HIT type) family protein contains Pfam profile PF04795:
           PAPA-1-like conserved region
          Length = 502

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 339 EWLIGVSSFVARDGCELGFPSVFASVPSSGP 247
           +W++G S  +     ELG PS+F S P S P
Sbjct: 435 KWVMGPSGTIVTFPEELGLPSIFNSTPHSYP 465


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 299 PSLATNELTPMSHSFPWWLIVNGPPESPR--*IPTPATPLVQMLEFKTTLP 445
           P+L  N L P   S P   ++  PP  P    +PTP TP +  +    TLP
Sbjct: 284 PTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPIPTIPTLP 334


>At3g10380.1 68416.m01244 exocyst complex component-related
           identical to Probable exocyst complex component Sec8
           (Swiss-Prot:Q93YU5) [Arabidopsis thaliana]; weak
           similarity to Exocyst complex component Sec8 (rSec8)
           (Swiss-Prot:Q62824) [Rattus norvegicus]
          Length = 1053

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 266 AYLPQGLDPTSHDILIAK*KFHDDTT 189
           A + Q L PT H+I+I+K K H +TT
Sbjct: 356 AIICQKLRPTIHEIIISKIKAHLETT 381


>At4g30200.3 68417.m04295 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 702

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 134 KGPFIKMLPSDIRQDRTGKCQGKKMAKTCLTI*Q*NGSRHR 12
           K   I+ L   + +  +G+C+GKK    CL I Q N  R R
Sbjct: 68  KVKIIETLLKIVSEKNSGECEGKKRDSDCLPI-QRNTKRQR 107


>At4g30200.2 68417.m04294 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 714

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 134 KGPFIKMLPSDIRQDRTGKCQGKKMAKTCLTI*Q*NGSRHR 12
           K   I+ L   + +  +G+C+GKK    CL I Q N  R R
Sbjct: 68  KVKIIETLLKIVSEKNSGECEGKKRDSDCLPI-QRNTKRQR 107


>At4g30200.1 68417.m04293 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 685

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 134 KGPFIKMLPSDIRQDRTGKCQGKKMAKTCLTI*Q*NGSRHR 12
           K   I+ L   + +  +G+C+GKK    CL I Q N  R R
Sbjct: 51  KVKIIETLLKIVSEKNSGECEGKKRDSDCLPI-QRNTKRQR 90


>At1g31770.1 68414.m03899 ABC transporter family protein contains
           Pfam profile: PF00005: ABC transporter
          Length = 648

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 432 LNSNICTSGVAGVGIYRGDSGGPLTINHQGKEWLIGVS 319
           L  N CT+ + G  ++RG SGG       G+E LI  S
Sbjct: 186 LGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPS 223


>At1g53000.1 68414.m05999 cytidylyltransferase family contains Pfam
           profile: PF02348 cytidylyltransferase
          Length = 290

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 465 ETCRGYYGNVVLNSNICTSGV--AGVGIYRGDSGGPLTINHQGKEWLI 328
           E CRG+  +V++ S  C +G       + + +    + +N QG E LI
Sbjct: 99  ECCRGFGADVIMTSESCRNGTERCNEALEKLEKKYDVVVNIQGDEPLI 146


>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 137 GNFQ*NLIALTNKISKF*SCHHEIFISL 220
           GN Q NL +LT+K+     C++E  +SL
Sbjct: 904 GNLQQNLSSLTDKLINTLGCYNEKLVSL 931


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,192,550
Number of Sequences: 28952
Number of extensions: 211512
Number of successful extensions: 462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)