Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0757
(472 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 30 0.20
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz... 29 0.27
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 2.5
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 2.5
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ... 26 3.3
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 25 4.4
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 25 4.4
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 25 4.4
SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.7
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 7.7
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 7.7
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 29.9 bits (64), Expect = 0.20
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -2
Query: 378 CVVLFPQT--SYSSSSNPWTETIRIAFWL*LQ*QSYDTKQVEAVILQR*LLPFLQSWKCS 205
CV L PQ +Y + S +T+ I W+ QV+ + + + P L ++
Sbjct: 31 CVQLIPQIIKNYRAKSTEGLDTLFILSWVVASIPLSVYNQVQELNIALKVQPEL--FQAL 88
Query: 204 VILTYSLCLFYRTRWHTYDRIFVI 133
T+ CL+Y ++W +FV+
Sbjct: 89 AFTTFFQCLYYGSKWPLRKALFVV 112
>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 29.5 bits (63), Expect = 0.27
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 334 IGA*GIRSLWEKNDATLTTDKEETERGATVTIALLK 441
+ A G+R+ + +A +++++E E G TV +ALLK
Sbjct: 278 LSADGLRAAFGNAEAVVSSEEEAEELGITVALALLK 313
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 43 LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQA 183
L+ LI + I +HN N L ++ + K H ++G+ +++A
Sbjct: 2380 LYSLIRLIFISQHNGKNPYYDLIVNISENKQHRADIVGLLLYILQEA 2426
>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +1
Query: 16 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSV--IGMPTCSIEQAEA 189
+K+T+ H T ++ V EHNL ++Q+ + D + +G ++ +A+
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQVDVIVNYFYDSSEKFLELGNKVQTLGKAKN 193
Query: 190 VRQYYAAFPALKKGQESPLQ 249
+ + + + K +Q
Sbjct: 194 KKHWLGVYQSFGKASVDQIQ 213
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.2 bits (55), Expect = 2.5
Identities = 23/95 (24%), Positives = 39/95 (41%)
Frame = +1
Query: 79 HNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQAEAVRQYYAAFPALKKGQESPLQYYC 258
HN+ ++ L + H SV SIE+ + R +Y ++ +QY
Sbjct: 114 HNVYHVDKTQFIELNPSRRHNTSVERKCMSSIEKVDLARTFYFSY---SYDLSQTIQYGF 170
Query: 259 LHLLGVVRLSLKSQPKCNANCLRPRIGA*GIRSLW 363
H + + ++ N N LRP + + GI S W
Sbjct: 171 TH--PIPQHQVRDMFVWNWNMLRPILDSVGIDSPW 203
>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 268
Score = 25.8 bits (54), Expect = 3.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 163 TCSIEQAEAVRQYYAAFPALKKGQESPLQYY 255
TC++ Q R + + ++K+G + +QYY
Sbjct: 129 TCNVPQRRLNRFFQTLYISMKRGGRAVMQYY 159
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 130 LCPGD*YTADQQCFLNCV 77
L PGD T DQ+ +NCV
Sbjct: 137 LLPGDLVTVDQKSVMNCV 154
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Frame = +3
Query: 345 RNKKFVGKERRNSYHGQRRNRK-------RSNGHNRSFESKDS 452
RN++ + KE R+S+H + + + N N+S ESK+S
Sbjct: 155 RNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGNKSLESKES 197
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 171 YRTSRGCTSILRCISSSEERARVTFAVLLPPPAWCRKTVTEV 296
Y +G ++CI +S ER + PPP + T T V
Sbjct: 470 YVPIKGFVQDIKCIQNSRERNELVSQFNTPPPTFAILTNTGV 511
>SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 24.6 bits (51), Expect = 7.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 115 SLQDIKDHEDSVIGMPTC 168
+++D +++DS I MPTC
Sbjct: 31 TIEDTSEYDDSDIEMPTC 48
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 352 RSLWEKNDATLTTDKEETERGATVTI 429
RSLW ++ L+ K+++E T+T+
Sbjct: 802 RSLWLESKTILSDKKDDSEDSRTITL 827
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 7.7
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +1
Query: 13 HVKIT-STHSTLHHLIPTVCIQEHNLGNIVDQL--CTSLQDIK-DHEDSVIGMPTCSIEQ 180
H+KI S ST HL+ V L D L C L+ ++I S+E
Sbjct: 91 HLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLEF 150
Query: 181 AEAVRQYYAAFPAL 222
E VRQ+ + PA+
Sbjct: 151 LEQVRQHLSRLPAI 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,102
Number of Sequences: 5004
Number of extensions: 37208
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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