Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0757
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544...    28   3.3  
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362...    28   3.3  
09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427           27   5.8  
06_01_0559 - 3973261-3973778,3974694-3975591                           27   5.8  
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624           27   7.6  
07_03_1436 - 26543846-26546806                                         27   7.6  
03_02_0830 + 11611588-11611660,11611720-11611952                       27   7.6  

>04_04_0137 -
           23053148-23053798,23053911-23054146,23054268-23054458,
           23054587-23056010
          Length = 833

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 310 CILAVTSVTVLRHQAGGGSNTAK 242
           C+L + S TVL    GGGSN  K
Sbjct: 12  CLLLIVSSTVLHFSIGGGSNGEK 34


>02_01_0500 -
           3623837-3624019,3624591-3624778,3625209-3626147,
           3626311-3626479,3626701-3626871,3626948-3627016,
           3627094-3627201,3627844-3627997,3628659-3628738,
           3628822-3628914,3628951-3629073,3629165-3629915,
           3630123-3630163,3630338-3630385
          Length = 1038

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 330 KDWSLRNKKFVGKERRNSYHGQRRNRKRSNGHNRSFESKDSF 455
           +D+     K +G   R  +HG   +R RS+  +R    +DS+
Sbjct: 131 RDFCFDRNKRIGSRDRAEFHGDFEDRYRSSHQSREDSREDSY 172


>09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427
          Length = 233

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 315 ELSPSKDWSLRNKKFVGKERRNSYH 389
           EL P+    +R + F G+ER NSYH
Sbjct: 32  ELHPNIIAIVREQPFSGRERENSYH 56


>06_01_0559 - 3973261-3973778,3974694-3975591
          Length = 471

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 276 DTKQVEAVILQR*LLPFLQSWKCSVILTYSLCLFY 172
           D  +VEAV      + FL++W+   +  ++ CLF+
Sbjct: 246 DVLEVEAVAELPRAIGFLEAWRLPGVAPFAFCLFF 280


>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
          Length = 528

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 228 FLQSWKCSVILTYSLCLFYRTRWHTYDRIFVI-FYVLET 115
           FL++WK   +  ++LCLF+ ++   Y  ++ + FY+  T
Sbjct: 304 FLEAWKIPGVAPFALCLFF-SKLVAYTFLYWLPFYISHT 341


>07_03_1436 - 26543846-26546806
          Length = 986

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 337  GA*GIRSLWEKNDATLTTDKEETERGAT--VTIALLKVRTAL 456
            G  G+ SLW      +T DKE  E   T  +T+A  ++R A+
Sbjct: 899  GPRGVISLWSDVKQAVTCDKESCEMAQTREITLAREEIRLAV 940


>03_02_0830 + 11611588-11611660,11611720-11611952
          Length = 101

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 189 CTSILRCISSSEERARVTFAVLLPPPAWCRKTVTEVTAKMQCELSPSKDWSLRNKKFVGK 368
           CTS L    +   RAR T A++   PA    +   +   ++ +LS S D S  +++ +GK
Sbjct: 10  CTSALASCHTDPMRARSTGALITEQPAVSLISNLPLHLCIRVDLSSSNDGSTSDRE-IGK 68

Query: 369 ERR 377
           + R
Sbjct: 69  KGR 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,830
Number of Sequences: 37544
Number of extensions: 249506
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)