Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0757
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)               30   0.84 
SB_45244| Best HMM Match : Protamine_P2 (HMM E-Value=4.5)              30   1.1  
SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_18950| Best HMM Match : CTP_transf_3 (HMM E-Value=3.9)              29   1.9  
SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)       29   2.6  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  

>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
          Length = 382

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
 Frame = +1

Query: 13  HVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDS--VIGMPTCSIE--- 177
           H+K    HSTL   +  VC     L ++ D  C +  D++ H +S   +   TC+++   
Sbjct: 253 HIKFR--HSTLRPYVCDVCDYRLVLISLFDYSCKTCSDLRRHRESHNAVFSYTCAVQGCA 310

Query: 178 -QAEAVRQYYAAFPALKKGQESPLQYYCLHLLG 273
             A A++     F    +G E  L  Y  HL G
Sbjct: 311 FSARAMQTLKRHFKITHEGGE--LAKYECHLCG 341


>SB_45244| Best HMM Match : Protamine_P2 (HMM E-Value=4.5)
          Length = 82

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 276 RKTVTEVTAKMQCELSPSKDWSLRNKKFVGKER---RNSYHGQRRNRKRSNGHNRSFESK 446
           R+  T + A     +   + +SL+ K+   ++R   RN    ++RNRKR+   NRS + K
Sbjct: 18  RQGGTRIQANTSTHVDTHRWFSLKRKRKRNRKRNRKRNRKRKRKRNRKRNRKRNRSRQRK 77


>SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 115 SLQDIKDHEDSVIGMPTCSIEQAEAVRQYYAAFPALKKGQESPLQYYCLHLLGVVRLSLK 294
           S++D+KD   S+        E+ E +R YY   P +   Q++      L+L+ +  + LK
Sbjct: 338 SVEDMKDKYSSLEETDNLCREEIEEMRYYYEKCPEVVSEQKTVYVEIALYLINLHSVDLK 397

Query: 295 S 297
           +
Sbjct: 398 A 398


>SB_18950| Best HMM Match : CTP_transf_3 (HMM E-Value=3.9)
          Length = 295

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/86 (19%), Positives = 39/86 (45%)
 Frame = +3

Query: 9   LPRQDHFNTLHTSSSDTYSLHSGTQFRKHC*SAVY*SPGHKRSRRFCHRYANVFYRTSRG 188
           LP +   ++ +TS+S   S+ +      H   + +    ++   R+     +V   T  G
Sbjct: 98  LPGEGETDSNYTSTSPPASISASLSRGAHLSGSYFSVEQNELKDRYFEMATSVKSVTDYG 157

Query: 189 CTSILRCISSSEERARVTFAVLLPPP 266
           C   ++ + S++ R R+  +++ P P
Sbjct: 158 CNHRVKNLDSTDSRHRIPISMMAPSP 183


>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
          Length = 1225

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 310 NANCLRPRIGA*GIRSLWEKNDATLTTDKEETERGA 417
           N N LR R+ A  I   WE ND  LT   + T+  A
Sbjct: 307 NENELRERVNALEIAKFWETNDTYLTNATKLTKLAA 342


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 268 LGVVRLSLKSQPKCNANCLRPRI 336
           L +  LSL S PKC+A C+R ++
Sbjct: 82  LALRSLSLVSPPKCSAGCIRRQV 104


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 70   IQEHNLGNIVDQLCTSLQDIKDH 138
            + EH+L +++D+ C  L  + DH
Sbjct: 1104 VTEHDLADVIDKSCAQLPRVMDH 1126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,042,239
Number of Sequences: 59808
Number of extensions: 302922
Number of successful extensions: 907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)