Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0757
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63720.1 68414.m07211 expressed protein similar to putative p...    29   2.1  
At3g59380.1 68416.m06622 farnesyltransferase alpha subunit, puta...    28   3.7  
At4g21430.1 68417.m03097 transcription factor jumonji (jmjC) dom...    27   4.8  
At2g37390.1 68415.m04585 heavy-metal-associated domain-containin...    27   4.8  
At1g30560.1 68414.m03739 transporter, putative similar to glycer...    27   4.8  
At1g58330.1 68414.m06635 transcription factor-related low simila...    27   6.4  
At1g04390.1 68414.m00429 expressed protein                             27   6.4  
At5g23450.2 68418.m02752 diacylglycerol kinase family protein co...    27   8.5  
At5g23450.1 68418.m02751 diacylglycerol kinase family protein co...    27   8.5  

>At1g63720.1 68414.m07211 expressed protein similar to putative
           protein GB:CAA18164 [Arabidopsis thaliana]
          Length = 358

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 195 SILRCISSSEERARVTFAVLLPPP 266
           S+L+C  SS +R R+  +VL+P P
Sbjct: 45  SLLKCFGSSRQRKRIGNSVLVPEP 68


>At3g59380.1 68416.m06622 farnesyltransferase alpha subunit,
           putative / FTA, putative / protein farnesyltransferase,
           putative similar to farnesyltransferase alpha subunit
           [GI:2246442][Pisum sativum]
          Length = 326

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 43  LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSV 150
           L+ L  T C     L  ++D LC  L+   +H+DSV
Sbjct: 248 LNVLSRTDCFHGFALSTLLDLLCDGLRPTNEHKDSV 283


>At4g21430.1 68417.m03097 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 728

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 294 VTAKMQCELSPSKDWSLRNKKFVGKERRNSYHGQRRNRKRS 416
           V  + +C  S  K W  + +   GK+   S+H Q ++ KRS
Sbjct: 7   VPDEFRCNRSDGKQWRCKRRALEGKKMCESHHSQ-QSLKRS 46


>At2g37390.1 68415.m04585 heavy-metal-associated domain-containing
           protein contains Pfam PF00403: Heavy-metal-associated
           domain; similar to copper homeostasis factor (CCH)
           (ATX1) (GB:U88711) (TIGR_Ath1:At3g56240) [Arabidopsis
           thaliana]
          Length = 259

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -1

Query: 376 RRSFPTNFLFLKLQSLDGDNSHCILAV----TSVTVLRHQAGGGSNTAKVTLAL 227
           RRSF  +F+ L   + DG+ S+  L +     S+T  R   GGG   A   L L
Sbjct: 50  RRSFADDFIKLPTSAEDGEMSNKKLEIYKGRRSITGRRSTGGGGGGGAAALLKL 103


>At1g30560.1 68414.m03739 transporter, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982
          Length = 510

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 228 FLQSWKCSVILTYSLCLFYRTRWHTYDRIFVI-FYVLET 115
           FL +WK   +  ++ CLF+ T+  +Y  ++ + FYV +T
Sbjct: 281 FLAAWKIPGVAPFAFCLFF-TKLVSYTFLYWLPFYVSQT 318


>At1g58330.1 68414.m06635 transcription factor-related low
           similarity to tumor-related protein [Nicotiana glauca x
           Nicotiana langsdorffii] GI:688423, ocs-element binding
           factor 4 [Arabidopsis thaliana] GI:414613, mas-binding
           factor MBF3 [Solanum tuberosum] GI:13195751; supporting
           cDNA gi|6520153|dbj|AB028196.1|
          Length = 225

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +1

Query: 88  GNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQAEAVRQYYAAFPALKKGQESPLQYYCLHL 267
           G +   + TS+ D+  H+  +  + +  +E     R     F  L++    PL       
Sbjct: 97  GMVFKLITTSVNDLTSHQ--IDQLESIRLETKRRERDLMRRFALLQQSVGDPLLMVPFRR 154

Query: 268 LGVVRLSLKSQPK 306
           +GV+RL    QP+
Sbjct: 155 IGVLRLGEGEQPE 167


>At1g04390.1 68414.m00429 expressed protein
          Length = 849

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = +1

Query: 88  GNIVDQLCTSLQDIKD 135
           GN+ D+LCT+L++I+D
Sbjct: 471 GNLKDRLCTTLKEIRD 486


>At5g23450.2 68418.m02752 diacylglycerol kinase family protein
           contains INTERPRO domain, IPR001206, DAG-kinase
           catalytic domain
          Length = 763

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 103 DQQCFLNCVP 74
           DQQCF+NC+P
Sbjct: 207 DQQCFINCLP 216


>At5g23450.1 68418.m02751 diacylglycerol kinase family protein
           contains INTERPRO domain, IPR001206, DAG-kinase
           catalytic domain
          Length = 763

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 103 DQQCFLNCVP 74
           DQQCF+NC+P
Sbjct: 207 DQQCFINCLP 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,318,033
Number of Sequences: 28952
Number of extensions: 202398
Number of successful extensions: 623
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)