Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0755
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    27   0.56 
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   0.97 
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    25   1.7  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   3.0  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    24   3.9  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    24   3.9  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    23   9.1  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         23   9.1  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    23   9.1  
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch...    23   9.1  

>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 171 ICNSHLIKRFKMSKMVLPIFDEKPTINSNGPIAR 272
           +CN H  K FK+  +VL +  E P ++ +  + R
Sbjct: 434 LCNKHEKKIFKLWLLVLKVIREGPQVHQSNVLPR 467


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +3

Query: 39  MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 152
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -2

Query: 161 VVMIRVGRTRRLVCYARVERHDGRENAAVNSHLSRRHTHGH*RHI 27
           +V++ V + + +  Y ++  +D  E   + S LSRR      +HI
Sbjct: 19  LVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHI 63


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 235 SSKMGKTIFDILKRLMRWLLQINHPSS 155
           S K+GK   +IL  L+R     NHP S
Sbjct: 529 SGKLGKNYTNILCLLLRLRQACNHPQS 555


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 192 KRFKMSKMVLPIFDEKPTINSNG 260
           K+ + S   LP+F EK   NSNG
Sbjct: 314 KKAQTSNERLPLFAEKSETNSNG 336


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 113 RVERHDGRENAAVNSHLSRRHTHGH*RH 30
           R   H   E     +H SRRH H H RH
Sbjct: 9   RTSTHKFNETDRETNH-SRRHRHHHSRH 35


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 271 LAIGPFEFIVGFSSKMGKTIFDILKRLMRW 182
           ++   F F     SK  K  FDIL++ + W
Sbjct: 482 ISASSFPFPSVIRSKYSKDWFDILRQTLNW 511


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 51 YPRALAPYCCRYKYGPR 1
          Y  +LA YC   KYG R
Sbjct: 10 YGSSLADYCLNAKYGQR 26


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 170 KPSVVMIRVGRTRRLVCYARVERHDGRENAAVNSH 66
           KP +    +  T   V +  +++HD +   A+NSH
Sbjct: 120 KPLITFSDIHETVN-VPFLCLDKHDSKNEVAINSH 153


>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 125

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 121 HTSRRVRPTRIMTTDGLSATATSSNVLKCQKWFCPFSTKNQ 243
           H S   + T I  TDG+SA A +++ +       P  T+NQ
Sbjct: 86  HNSLAPQFTEIRYTDGISAKAENTDEMTMHIALAPL-TENQ 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,201
Number of Sequences: 5004
Number of extensions: 21936
Number of successful extensions: 59
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)