Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0755
(291 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39180.1 68415.m04812 protein kinase family protein contains ... 27 2.2
At2g32080.2 68415.m03921 PUR alpha-1 protein identical to PUR al... 27 2.2
At2g32080.1 68415.m03920 PUR alpha-1 protein identical to PUR al... 27 2.2
At5g62680.1 68418.m07866 proton-dependent oligopeptide transport... 26 3.8
At3g21170.1 68416.m02674 F-box family protein contains Pfam prof... 26 3.8
At2g32910.1 68415.m04035 expressed protein 26 3.8
At1g63530.1 68414.m07182 hypothetical protein 26 3.8
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein... 26 5.0
At3g24300.1 68416.m03051 ammonium transporter 1, member 3 (AMT1.... 26 5.0
At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein co... 25 6.6
At5g01980.1 68418.m00117 zinc finger (C3HC4-type RING finger) fa... 25 8.8
At3g45650.1 68416.m04931 proton-dependent oligopeptide transport... 25 8.8
At1g68030.1 68414.m07772 PHD finger protein-related contains low... 25 8.8
>At2g39180.1 68415.m04812 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 776
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 135 CSPDAYHDDGWFICNSHLIKRFKMSKM 215
CSP DGWF N+ ++K +++ +
Sbjct: 336 CSPRGNCGDGWFAFNASILKESELTSL 362
>At2g32080.2 68415.m03921 PUR alpha-1 protein identical to PUR
alpha-1 GI:5081612 from [Arabidopsis thaliana]; contains
Pfam profile: PF04845 PurA ssDNA and RNA-binding protein
Length = 295
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 239 FFVENGQNHF*HFKTFDEVAVADKPSVVM 153
FF + G N+ HF EVA +D+ S+++
Sbjct: 228 FFFDLGNNNRGHFLRISEVAGSDRSSIIL 256
>At2g32080.1 68415.m03920 PUR alpha-1 protein identical to PUR
alpha-1 GI:5081612 from [Arabidopsis thaliana]; contains
Pfam profile: PF04845 PurA ssDNA and RNA-binding protein
Length = 296
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 239 FFVENGQNHF*HFKTFDEVAVADKPSVVM 153
FF + G N+ HF EVA +D+ S+++
Sbjct: 229 FFFDLGNNNRGHFLRISEVAGSDRSSIIL 257
>At5g62680.1 68418.m07866 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 616
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 111 ACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIF 230
A +T + PD D W +C ++ K VLPI+
Sbjct: 320 AILTPEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIW 359
>At3g21170.1 68416.m02674 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 394
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 173 DKPSVVMIRVGRTRRLVCYARVERHDGRENAAV-NSHLSRRHTHGH*RHIVAVINMDH 3
D P +++ + V AR+ R N + + LS++H+ RH +A++ +DH
Sbjct: 5 DLPEDLVVEILSRVPAVFLARLRSTSKRWNTLIKDGKLSKKHSSNAPRHSMALVLIDH 62
>At2g32910.1 68415.m04035 expressed protein
Length = 691
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 144 DAYHDDGWFICNSHLIKRFKMSKMVLP 224
D+Y D ++IC H ++R + MV P
Sbjct: 610 DSYRRDPYYICERHALERPPRTYMVSP 636
>At1g63530.1 68414.m07182 hypothetical protein
Length = 499
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 1 PWSIFITATIWR*CPWVWRRDK*ELTAAFSRPSCRST 111
PWSI +T R W W R + A S S ST
Sbjct: 120 PWSISAYSTAGRGVEWAWARPDVAVYPASSSSSSTST 156
>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
similar to NAM family proteins GP|12751304|,
GP|6223650|, GP|9758909 - Arabidopsis
thaliana,PIR2:T04621
Length = 498
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 200 KTFDEVAVADKPSVVMIRVGRTRRLVCYARVERHDGRENAAVNSHLSRRHTHGH 39
K+FDEVA + P + G A RH + +++ + H++ H H H
Sbjct: 317 KSFDEVARRETP-----QTGHATCEDVMAEQHRHRHQPSSSTSHHMAHDHHHHH 365
>At3g24300.1 68416.m03051 ammonium transporter 1, member 3 (AMT1.3)
nearly identical to SP|Q9SQH9|AT13_ARATH Ammonium
transporter 1, member 3 (AtAMT1;3) {Arabidopsis
thaliana}
Length = 498
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 247 IVGFSSKMGKTIFDILKRLMRWLLQINHPSS*YASGEHGDL-YVMHASND 101
IVG+ S T+F ILKRL + H HG Y+ H ++D
Sbjct: 429 IVGWVSATMGTLFFILKRLNLLRISEQHEMQGMDMTRHGGFAYIYHDNDD 478
>At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 633
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 222 PIFDEKPTINSNGPIARHLSW 284
P FD N+ GP+A HL W
Sbjct: 421 PDFDFSELENNKGPLALHLIW 441
>At5g01980.1 68418.m00117 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 493
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 140 RTRRLVCYARVERHDGRENAAVNSHLSRRHTH 45
R RR+ R RHD E+ V S++ TH
Sbjct: 69 RRRRMRRRRRTTRHDSSESVGVGDLSSQQFTH 100
>At3g45650.1 68416.m04931 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 558
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 111 ACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEKPTINSNGPIARHLS 281
A + + PD + W +C+ ++ FK ++P+ TI + PIA LS
Sbjct: 284 AALKQEDEVKPDGTIRNPWRLCSVQQVEDFKAVIRIIPL--ALATIFLSTPIAMQLS 338
>At1g68030.1 68414.m07772 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 314
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 78 RCIFASIVSFDACITYKSPCSPDAYHDDGWFICN 179
+ +F S + + K SP +YHD G F C+
Sbjct: 237 KLLFCSSDGCEVMVHQKCLDSPPSYHDAGDFYCS 270
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,767,917
Number of Sequences: 28952
Number of extensions: 118257
Number of successful extensions: 325
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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