Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0754
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)               59   3e-09
SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)               33   0.21 
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 31   1.1  
SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_11275| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.0005)            28   5.9  
SB_41121| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)               28   7.7  
SB_14798| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)               28   7.7  
SB_4685| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  
SB_3304| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)                28   7.7  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)               28   7.7  
SB_5379| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)                28   7.7  

>SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)
          Length = 2278

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 28/55 (50%), Positives = 34/55 (61%)
 Frame = -3

Query: 166 YIIDSLKEFLPASYVKVKGIEKKVFREHKKHVGLSELDAKVLYTKTARDLKTYGV 2
           Y +  LKE LP  YVK K I+KK+  EH+K  GL EL  +  Y +  R LKTYGV
Sbjct: 236 YKLIDLKEVLPKEYVKSKNIDKKIKEEHRKFNGLDELQGRYKYVQLCRGLKTYGV 290


>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
          Length = 573

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 85  HKKHVGLSELDAKVLYTKTARDLKTYGV 2
           HK H G+S+  A++ Y K A+ L+ YG+
Sbjct: 390 HKAHTGISDAQAEIEYLKEAQKLQEYGI 417


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = -3

Query: 178  FYNVYIIDSLKEFLPASYVKV--KGIEKKVFREHKKHVGLSELDAKVLYTKTARDLKTYG 5
            F  ++++DS+ E L   ++K   K  ++K  +  KK +G+S+    +LYT   +   T+G
Sbjct: 1031 FSPLFVVDSVPEELVPEHMKQYQKDTDRKTLKGPKKLLGVSKAKKILLYTPVLKWYLTHG 1090

Query: 4    V 2
            +
Sbjct: 1091 L 1091



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = -3

Query: 178  FYNVYIIDSLKEFLPASYVKV--KGIEKKVFREHKKHVGLSELDAKVLYTKTARDLKTYG 5
            F  ++++DS+ E L   ++K   K  ++K  +  KK +G+++    +LYT   +   T+G
Sbjct: 1108 FSPLFVVDSVPEELVPEHMKQYQKDTDRKTLKGTKKLLGVTKAKKILLYTPLLKWYLTHG 1167

Query: 4    V 2
            +
Sbjct: 1168 L 1168


>SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 106 EKKVFREHKKHVGLSELDAKVLYTKTARDLKTYGV 2
           E  VF+ H+ H+GLS  +A   + + A +   YGV
Sbjct: 194 EAMVFKCHRSHLGLSRTEAITQFLELATEFPFYGV 228


>SB_11275| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.0005)
          Length = 256

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 531 DKNQRKNHNRTLTPHIATAN*RERQKFSEKL*QQIRYG*REKI 403
           +KN     +  ++  I  A  ++R KF E+   Q RYG REK+
Sbjct: 41  EKNTASVDDSDVSSEIRNAQRKKRLKFMEERRAQCRYGSREKL 83


>SB_41121| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 550

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 268 KDEK*KTIYYSVEVSYFSRAPICTLTIFILFYNVYIIDS 152
           K EK  T  +SVEV     AP C   I  + +N +IIDS
Sbjct: 196 KQEKAVTHLFSVEVRNVKEAPTCEAEIRGMVFN-FIIDS 233


>SB_14798| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)
          Length = 377

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 268 KDEK*KTIYYSVEVSYFSRAPICTLTIFILFYNVYIIDS 152
           K EK  T  +SVEV     AP C   I  + +N +IIDS
Sbjct: 207 KQEKAVTHLFSVEVRNVKEAPTCEAEIRGMVFN-FIIDS 244


>SB_4685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 268 KDEK*KTIYYSVEVSYFSRAPICTLTIFILFYNVYIIDS 152
           K EK  T  +SVEV     AP C   I  + +N +IIDS
Sbjct: 150 KQEKAVTHLFSVEVRNVKEAPTCEAEIRGMVFN-FIIDS 187


>SB_3304| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 285

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 268 KDEK*KTIYYSVEVSYFSRAPICTLTIFILFYNVYIIDS 152
           K EK  T  +SVEV     AP C   I  + +N +IIDS
Sbjct: 80  KQEKAVTHLFSVEVRNVKEAPTCEAEIRGMVFN-FIIDS 117


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 268  KDEK*KTIYYSVEVSYFSRAPICTLTIFILFYNVYIIDS 152
            K EK  T  +SVEV     AP C   I  + +N +IIDS
Sbjct: 1284 KQEKAVTHLFSVEVRNVKEAPTCEAEIRGMVFN-FIIDS 1321


>SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 799

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 268 KDEK*KTIYYSVEVSYFSRAPICTLTIFILFYNVYIIDS 152
           K EK  T  +SVEV     AP C   I  + +N +IIDS
Sbjct: 271 KQEKAVTHLFSVEVRNVKEAPTCEAEIRGMVFN-FIIDS 308


>SB_5379| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 285

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 268 KDEK*KTIYYSVEVSYFSRAPICTLTIFILFYNVYIIDS 152
           K EK  T  +SVEV     AP C   I  + +N +IIDS
Sbjct: 80  KQEKVVTHLFSVEVRNVKEAPTCEAEIRGMVFN-FIIDS 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,638
Number of Sequences: 59808
Number of extensions: 251005
Number of successful extensions: 527
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)