Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0754
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        48   6e-06
AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical...    48   6e-06
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    48   6e-06
Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 25/49 (51%), Positives = 29/49 (59%)
 Frame = -3

Query: 148 KEFLPASYVKVKGIEKKVFREHKKHVGLSELDAKVLYTKTARDLKTYGV 2
           ++ LP  Y K K  EKKV   +K+  G SELDAK  Y    R LKTYGV
Sbjct: 290 RDVLPKEYAKNKENEKKVVAMYKELSGTSELDAKSKYVHLCRGLKTYGV 338


>AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11b protein.
          Length = 996

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 25/49 (51%), Positives = 29/49 (59%)
 Frame = -3

Query: 148 KEFLPASYVKVKGIEKKVFREHKKHVGLSELDAKVLYTKTARDLKTYGV 2
           ++ LP  Y K K  EKKV   +K+  G SELDAK  Y    R LKTYGV
Sbjct: 290 RDVLPKEYAKNKENEKKVVAMYKELSGTSELDAKSKYVHLCRGLKTYGV 338


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11a protein.
          Length = 2553

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 25/49 (51%), Positives = 29/49 (59%)
 Frame = -3

Query: 148 KEFLPASYVKVKGIEKKVFREHKKHVGLSELDAKVLYTKTARDLKTYGV 2
           ++ LP  Y K K  EKKV   +K+  G SELDAK  Y    R LKTYGV
Sbjct: 290 RDVLPKEYAKNKENEKKVVAMYKELSGTSELDAKSKYVHLCRGLKTYGV 338


>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical
           protein C01B9.1b protein.
          Length = 1671

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 163 IIDSLKEFLPASYVKVKGIEKKVFREHKKHVG--LSELDAKVLYTKTARD 20
           +++ + + L +S VK+K    ++F      +   LS+LD KVL  KT  D
Sbjct: 112 LLEEMAKMLKSSNVKLKKFSVRLFETPSDPIEKILSDLDVKVLVLKTDWD 161


>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical
           protein C01B9.1a protein.
          Length = 1601

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 163 IIDSLKEFLPASYVKVKGIEKKVFREHKKHVG--LSELDAKVLYTKTARD 20
           +++ + + L +S VK+K    ++F      +   LS+LD KVL  KT  D
Sbjct: 42  LLEEMAKMLKSSNVKLKKFSVRLFETPSDPIEKILSDLDVKVLVLKTDWD 91


>Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical
           protein C11G6.3 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 531 DKNQRKNHNRTLTPHIATAN*RERQKFSEKL*QQIRYG*REKIQFRKSESEK 376
           ++++RK   R L      +  +ER+K  EK  ++ R   REK + R+ E EK
Sbjct: 211 ERSERKEKERELEREKEKSREKEREKEREKEREKEREKEREKQKEREKEREK 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,454,228
Number of Sequences: 27780
Number of extensions: 196363
Number of successful extensions: 542
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)