Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0753
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186... 32 0.31
07_03_0258 - 15907667-15907909,15909015-15909081,15910218-15910237 29 2.2
03_02_0098 + 5608787-5610812,5610956-5611053 29 2.2
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355... 29 3.9
04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718 29 3.9
03_01_0534 + 3996479-3997458,3997938-3998265 29 3.9
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 29 3.9
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062... 28 5.1
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962... 27 8.9
>07_03_0521 +
19016824-19017000,19017064-19017099,19017860-19018624,
19018772-19018864,19018944-19019114,19019206-19019397,
19019443-19019530,19019617-19019685,19019841-19020054,
19020136-19020334,19020406-19020504,19020594-19020850,
19020927-19021002,19021091-19021204
Length = 849
Score = 32.3 bits (70), Expect = 0.31
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 64 LSKTNPNPSTILYQVLYNISYVK--INAIFGLPCGNSHGLTNHCSRDKAPRGKRRK 225
LSK +P TI+ + + +NA+FGLPC S L CS+D+ GK++K
Sbjct: 160 LSKVDPKSGTIVTDFNQELPFGPNDVNAVFGLPC--SGQLIIPCSQDELD-GKKQK 212
>07_03_0258 - 15907667-15907909,15909015-15909081,15910218-15910237
Length = 109
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 220 RKWAQWVRGGG 252
RKW QWVRGGG
Sbjct: 55 RKWRQWVRGGG 65
>03_02_0098 + 5608787-5610812,5610956-5611053
Length = 707
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 357 VSCCSLYFISCLMEAEITNRSTI 425
+ C SLYF+SCL ++++ +TI
Sbjct: 278 LQCWSLYFLSCLASRDVSSHATI 300
>05_05_0046 -
21834942-21835055,21835145-21835220,21835297-21835553,
21835643-21835741,21835820-21836018,21836102-21836315,
21836470-21836538,21836626-21836950,21837065-21837235,
21837315-21837479,21837555-21838191,21838258-21838319,
21838581-21838652,21839256-21839291,21839361-21839489
Length = 874
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 64 LSKTNPNPSTILYQVLYNISYVK--INAIFGLPCGNSHGLTNHCSRDKAPRGKRR 222
LSK +P I+ V + + +NA+FGLPC + CS+D+ GK++
Sbjct: 146 LSKVDPKSCAIVKDVNQELPFGPNDVNAVFGLPCSGQPIIP--CSQDELD-GKKQ 197
>04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718
Length = 587
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 190 SRDKAPRGKRRKWAQWVRGGGDEVRRGKMSN--SGCFIV 300
S+D +GK R+ QW+ G +EV + + N +GC ++
Sbjct: 107 SKDSNNKGKFRELVQWLAGNFEEVNKVVLGNAPTGCQMI 145
>03_01_0534 + 3996479-3997458,3997938-3998265
Length = 435
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 214 KRRKWAQWVRGGGDEVRRGKMSNSGCFIVSTYQYLKK 324
K WA RG G R G MS S +V+TY++LK+
Sbjct: 287 KEGGWAACYRGLGP--RWGSMSLSAATMVTTYEFLKR 321
>01_06_1351 -
36510599-36510712,36510802-36510877,36510954-36511210,
36511300-36511398,36511477-36511675,36511759-36511972,
36512127-36512195,36512283-36512607,36512722-36512892,
36512972-36513136,36513212-36513848,36513915-36513976,
36514237-36514308,36514912-36514947,36515017-36515145
Length = 874
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 64 LSKTNPNPSTILYQVLYNISYVK--INAIFGLPCGNSHGLTNHCSRDKAPRGKRR 222
LSK +P I+ V + + +NA+FGLPC + CS+D+ GK++
Sbjct: 146 LSKVDPKSCAIVKDVNQELPFGPNDVNAVFGLPCSGQPIIP--CSQDELD-GKKQ 197
>02_05_0862 -
32305562-32305654,32305935-32306033,32306178-32306259,
32307407-32307764,32308745-32309521,32309612-32309716,
32309803-32309911,32311016-32311024
Length = 543
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 172 GLTNHCSRDKAPRGKRRKWAQWVRGGGD 255
G+ +H SR APRG+ + + RG GD
Sbjct: 27 GIGSHASRGTAPRGEEEEEEEEWRGDGD 54
>11_03_0073 -
9621199-9621312,9621401-9621476,9621553-9621619,
9621655-9621751,9621898-9621996,9622348-9622358,
9622716-9622784,9622871-9623195,9623287-9623457,
9623538-9623713,9624173-9624414,9624481-9624542,
9625305-9625340,9626103-9626262,9626372-9626606,
9626694-9626949,9627062-9627176,9628388-9628450,
9628592-9629325
Length = 1035
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 64 LSKTNPNPSTILYQVLYNISYVK--INAIFGLPC 159
LSK +P TI+ + + +NA+FGLPC
Sbjct: 600 LSKVDPKSGTIVTDFNQELPFGPNDVNAVFGLPC 633
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,893,680
Number of Sequences: 37544
Number of extensions: 306492
Number of successful extensions: 788
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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