Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0753
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    31   0.49 
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    31   0.86 
Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 85  PSTILYQVLYNISYVKINAIFGLPC-GNSHGLTNHCSRDKAPRGKRRKWAQWVRGGGDEV 261
           PS + YQ + N++Y    +   LPC  N +   N+CS    P G   ++ + V     + 
Sbjct: 297 PSFLDYQAI-NMAYGCTESCADLPCLRNGYTHPNNCSMCACPEGLSGRYCEQVYPSNAQC 355

Query: 262 RRGKMS 279
            RGK++
Sbjct: 356 ARGKLT 361


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
            protein Y59A8B.1a protein.
          Length = 1641

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 253  DEVRRGKMSNSGCFIVSTYQYLKKSELQRMH 345
            +E RR +MS   C +VST   +K    QR+H
Sbjct: 1040 EEARRSRMSTRDCSVVSTLGPVKSKASQRLH 1070


>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 59  FAYPRQIQIQVQYYTKYYIIFLMSKLMP 142
           FA+   + +++Q+Y    +IFL+ K+MP
Sbjct: 140 FAHTWSLSVEIQFYFLVPVIFLIGKVMP 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,984,715
Number of Sequences: 27780
Number of extensions: 278783
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)