Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0753
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +2

Query: 50  SNSFAYPRQIQIQVQYYTKYYIIFLMSKLMPFLDCPV 160
           SN   Y  +   Q  +Y  YY     S  +PF   P+
Sbjct: 276 SNDLPYLEEFDWQKPFYPGYYPTMTYSNGLPFPQRPI 312


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = +2

Query: 50  SNSFAYPRQIQIQVQYYTKYYIIFLMSKLMPFLDCPV 160
           SN   +  +   Q  +Y  YY     S  +PF   P+
Sbjct: 276 SNDLPHLEEFDWQKPFYPGYYPTMTYSNGLPFPQRPI 312


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 524 EYNKKNSKDHHH 559
           ++NK+ SK++HH
Sbjct: 56  DHNKEKSKNNHH 67


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 342 ALRYYVSCCSLYFISCLMEAEITN 413
           A+  ++S CS++    LME  + N
Sbjct: 275 AIDVWMSSCSVFVFLSLMEFAVVN 298


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 288 TTVTHFSPPDFVST 247
           TT+TH   PD  ST
Sbjct: 308 TTITHLRDPDHHST 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,695
Number of Sequences: 438
Number of extensions: 4086
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)