Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0753
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger) fa...    29   2.4  
At5g48020.1 68418.m05934 expressed protein                             27   7.5  
At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family pr...    27   9.9  
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT...    27   9.9  

>At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 369

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 238 VRGGGDEVRRGKMSNSGCFIVSTYQYL 318
           V GGG E     + N  CF + +YQY+
Sbjct: 252 VVGGGGETSSSSLDNRRCFSMGSYQYI 278


>At5g48020.1 68418.m05934 expressed protein
          Length = 355

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 48  EVTHSLIQDKSKSKYNTIPSTI*YFLCQN*CHFWIALWQ 164
           EV  SL+ ++ + K+NT+P+     + +   H W  +W+
Sbjct: 90  EVPRSLVDEEMQEKFNTMPNEYKPHIPKGPDHKWRYMWR 128


>At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family
           protein
          Length = 511

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 76  NPNPSTILYQVLYNISY-VKINAIFGLPCGN 165
           NPNPS +  Q  YN+++    + +   PCG+
Sbjct: 257 NPNPSPVYLQNRYNLNFSTSSSTLARAPCGD 287


>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
           identical to homeobox protein knotted-1 like 1  (KNAT1)
           SP:P46639 from [Arabidopsis thaliana]
          Length = 398

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 521 PEYNKKNSKDHHHSWLLLAEQSVVI 595
           P YN  N+ +HHH  +L    S ++
Sbjct: 48  PGYNNTNNNNHHHQHMLFPHMSSLL 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,132,802
Number of Sequences: 28952
Number of extensions: 256380
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)