Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0751
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    28   1.2  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      25   8.8  

>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/39 (25%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = -2

Query: 485 VNTSD-IVQVPRASMRRFMDRLMNNIGMLLMLSTANRVL 372
           +N +D + +  +A++RR M++  NNI ++L+ ++ ++++
Sbjct: 133 INVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKII 171


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 198 PYSELKLNYLYIKKDVWCRGTPDSNEVPYYKNMN 97
           PYS  + +Y Y++ D     TP +  + Y+ N++
Sbjct: 449 PYSPYRDSYFYLEDDDGDADTPSTASLDYFSNIS 482


>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 560 LSLIVL*MFRSILHASFPVPICGDEV 483
           + L+    F +ILH S PVPI   EV
Sbjct: 10  IKLVTFDAFGTILHLSKPVPIVYSEV 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,080
Number of Sequences: 5004
Number of extensions: 39886
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)