Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0751
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   1.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.2  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 138 TPDSNEVPYYKNMNFKFCSRYKENN--YSGI 52
           +P ++   YY NM     S+Y+ENN  Y GI
Sbjct: 269 SPLTSHSLYYVNMEPFMKSQYEENNIEYEGI 299


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 51  VYPNNYFLYTSNRT*NSYFYNKELRY 128
           ++ NNY    +N   N+  YNK+L Y
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 51  VYPNNYFLYTSNRT*NSYFYNKELRY 128
           ++ NNY    +N   N+  YNK+L Y
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 217 VIYLNHTTITDKSGFESQRYKRSFHF 294
           V + NH  I   SGF  +R+++ + F
Sbjct: 281 VHHANHHAILGHSGFLCERHQKRYFF 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,885
Number of Sequences: 438
Number of extensions: 3183
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)