Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0750
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 1.8
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 27 1.8
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 3.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.4
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 5.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 5.4
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 26 5.4
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 25 7.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 7.1
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 25 9.4
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 9.4
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 25 9.4
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +3
Query: 387 APAAVSYHSAP--VAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSATVTQ*RAHT 560
+P++ Y ++P + ++ +Y +YS TSP+ SAT +
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SATSPSYSPTS 1617
Query: 561 PSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
PS T+PS ++P T+ + S T+P
Sbjct: 1618 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 26.2 bits (55), Expect = 4.1
Identities = 24/94 (25%), Positives = 42/94 (44%)
Frame = +3
Query: 366 APVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSATVTQ 545
+P + +P + SY +P + ++ A +Y +YS TSP+ S T
Sbjct: 1586 SPTSPSYSPTSPSY--SPTSP--SYSATSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPS 1640
Query: 546 *RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
+PS T+PS ++P T+ + S T+P
Sbjct: 1641 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674
Score = 25.8 bits (54), Expect = 5.4
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = +3
Query: 351 YHAAPA--PVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNK 524
Y +PA P + +P + SY +P + ++ +Y +YS TSP+
Sbjct: 1565 YSTSPAYMPSSPSYSPTSPSY--SPTSP--SYSPTSPSYSPTSPSYSATSPSYSPTSPSY 1620
Query: 525 KSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
S T +PS T+PS ++P T+ + S T+P
Sbjct: 1621 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660
Score = 25.4 bits (53), Expect = 7.1
Identities = 22/96 (22%), Positives = 39/96 (40%)
Frame = +3
Query: 360 APAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSATV 539
+P+ Y +PA + + ++ +Y +YS TSP+ S T
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSY-SPTS 1617
Query: 540 TQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
+PS T+PS ++P T+ + S T+P
Sbjct: 1618 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.5 bits (58), Expect = 1.8
Identities = 26/104 (25%), Positives = 41/104 (39%)
Frame = +3
Query: 336 ATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETS 515
+TP+++HA P+ A P + HS+ K H + P Y S D T
Sbjct: 259 STPLSFHAPIPPLHVPAVPLTSASHSSSDGKSRKHPS-----PYKPYLNSSHDTLGSSTR 313
Query: 516 PNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
P+ A +P+T A ++ + +AST T P
Sbjct: 314 PSSADT------AGSPATSPPATADSKTIVSKTISASTTQQTEP 351
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 477 NYSVADGHSGETSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
N +V E+S + T + +A P PSE STP ++ +T S T P
Sbjct: 22 NEAVESSTKEESSNTPSTETQPEKKAEEPEAA-AEPSESTSTPTNASSVATPSGTAP 77
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/85 (20%), Positives = 39/85 (45%)
Frame = +3
Query: 390 PAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSATVTQ*RAHTPST 569
P+ S S+ + + + + A + ++ S +SP S+T++ + + S
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP 300
Query: 570 KLTAPSEPLSTPLMHTTASTLSSTT 644
T+ + S+ + +STLSS++
Sbjct: 301 TSTSSTISSSSSSSSSFSSTLSSSS 325
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 189 GQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGDQLG 55
GQ ++ P+R N+H+GF + V + + +S+ G QLG
Sbjct: 781 GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA----GKQLG 821
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 483 SVADGHSGETSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSST 641
S++ GETS S+ +Q A P T T+ S + + ++ ST S+
Sbjct: 749 SISQSSDGETSGYTISSNSSQNSASEPQTAFTSSSSSATPTITQSSISTSVSS 801
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 135 RHGVRCSGRKLPQQMSSGPVPPGD 64
R+ + CSGRKL +Q +G GD
Sbjct: 59 RNEITCSGRKLYRQKGTGHARVGD 82
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 363 PAPVTYHAAPAAVSYHSAPVAK----IVAHQAEEIAYPKYEYNYSVADGHSGETSPNKK 527
P P ++AP+A HS P +++A ++ +P E ++S + SP +K
Sbjct: 132 PLPNIRNSAPSATRSHSTPCVAPGYLRTSNEAADVVFPHEEAHFSNHNPKPNNGSPLQK 190
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 558 TPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
TPST T+ +P ++ + T+A +LSS P
Sbjct: 301 TPSTIATSTLQPTTSSPITTSAPSLSSALP 330
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 8 QNVFQINSTVRICGVVPSWSPGG 76
QN+F+I ++I G+ S+SP G
Sbjct: 276 QNIFEIFEILKILGIPASFSPIG 298
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 639 WTTALKPLCASAVYSTVLMEPSASWKEYEPFTASPSRTS 523
W T+L A ++ S LM ++ + Y P AS SR+S
Sbjct: 173 WETSLDESDAESISSGSLMSITSISEMYGPTVASTSRSS 211
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 414 APVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSP 518
A V ++ Q ++ P Y + V D H G+ SP
Sbjct: 16 AKVLHLLEGQVSNLSLPSYIKHLKVVDFHFGKVSP 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,124
Number of Sequences: 5004
Number of extensions: 35554
Number of successful extensions: 132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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