Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0750
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 33 0.20
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024) 32 0.35
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 32 0.46
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014) 29 2.5
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 29 3.3
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1) 29 3.3
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 3.3
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 4.3
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 5.7
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 28 5.7
SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25) 28 7.5
SB_26794| Best HMM Match : DENN (HMM E-Value=1.4e-38) 28 7.5
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 474 YNYSVADGHSGETSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
Y +V ++ T+P + T T TP T P+ +TP TT+ ++TTP
Sbjct: 103 YTATVTAPNATTTTPTATTTTTTTTTTTTPYATTTTPNTTTTTPNTTTTSPNATTTTP 160
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 477 NYSVADGHSGETSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
N + ++ T+PN + T T TP+ T P+ +TP TT T ++TTP
Sbjct: 154 NATTTTPNTTTTTPNTTTTTPTA-TTTTPTATTTTPNTTTNTPNATTTTPTATTTTP 209
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 510 TSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
T+PN + T TP+T T P+ +TP TT T ++TTP
Sbjct: 144 TTPNT-TTTSPNATTTTPNTTTTTPNTTTTTPTATTTTPTATTTTP 188
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 510 TSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
T+ N +AT T TP+ T P+ +TP TT ++TTP
Sbjct: 190 TTTNTPNATTT-----TPTATTTTPNATTTTPNTTTTTPNATTTTP 230
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 510 TSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
T+P + T +TP+ T P+ +TP TT ++TTP
Sbjct: 179 TTPTATTTTPNT-TTNTPNATTTTPTATTTTPNATTTTPNTTTTTP 223
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 495 GHSGETSPNKKSATVTQ*RAHTPSTKLTAP-SEPLSTPLMHTTASTLSSTTP 647
G SG T + + + H+P+T T+P S L TP HT+ ++TTP
Sbjct: 1061 GSSGGTQEHGPGSNQPSDKIHSPATSHTSPVSTHLPTPNCHTSTPHTTTTTP 1112
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 548 KGSYSFHEADGSIRTVEYTADAHNGFNAVVH 640
KGSY H+ DG RT+EY + G+ H
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAH 1772
>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
Length = 286
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +3
Query: 492 DGHSGETSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
+G G +P T A TP+T TAP+ P +TP T T ++TTP
Sbjct: 113 EGEGGGDTPTTAPTTA----ATTPTTPTTAPTTP-TTPTTAATTPTTAATTP 159
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 31.9 bits (69), Expect = 0.46
Identities = 26/102 (25%), Positives = 37/102 (36%)
Frame = +3
Query: 336 ATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETS 515
A P T + AP AAPA APV A A + A + ++
Sbjct: 1307 AAPATAYPTQAPANPTAAPATAYPAQAPVNPTAAPATAYPAQAPVNPTAAPATAYPAQSP 1366
Query: 516 PNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSST 641
N +A T A P+ + P P +TTA+ + T
Sbjct: 1367 FNPTAAPATAYPAQAPANPTAGTAYPTQAP-FNTTAAPVYQT 1407
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 31.9 bits (69), Expect = 0.46
Identities = 23/98 (23%), Positives = 36/98 (36%)
Frame = +3
Query: 354 HAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSA 533
H P H P + H+ PV+ ++ P S ++P+
Sbjct: 398 HTPPVSTPSHTPPVSTPSHTPPVS--TPSHTPPVSTPSNTPPVSTPSHTPPVSTPSHTPP 455
Query: 534 TVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
T +HTP + + P+STP ST S+T P
Sbjct: 456 VSTP--SHTPPVSTPSHTPPVSTPSHTPPVSTPSNTPP 491
Score = 31.5 bits (68), Expect = 0.61
Identities = 23/98 (23%), Positives = 34/98 (34%)
Frame = +3
Query: 354 HAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSA 533
H P H P + H+ PV+ ++ P + S +P+
Sbjct: 443 HTPPVSTPSHTPPVSTPSHTPPVS--TPSHTPPVSTPSHTPPVSTPSNTPPVFTPSHTPP 500
Query: 534 TVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
T +HTP + S P+STP T S T P
Sbjct: 501 VFTP--SHTPPVSTPSNSPPVSTPSNTLPVFTPSHTPP 536
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/95 (23%), Positives = 36/95 (37%)
Frame = +3
Query: 363 PAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSATVT 542
P H P + H+ PV+ ++ P + S ++P+ T
Sbjct: 437 PVSTPSHTPPVSTPSHTPPVS--TPSHTPPVSTPSHTPPVSTPSHTPPVSTPSNTPPVFT 494
Query: 543 Q*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
+HTP + + P+STP ST S+T P
Sbjct: 495 P--SHTPPVFTPSHTPPVSTPSNSPPVSTPSNTLP 527
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 30.7 bits (66), Expect = 1.1
Identities = 34/105 (32%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +3
Query: 336 ATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETS 515
+TP T P T + P S S P I P +S S ++
Sbjct: 387 STPSTPSTPRTPST-PSTPCTPSTPSTPSTPITPRT------PSTPCTHSTPGTPSTPST 439
Query: 516 PNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSS-TTP 647
P+ S T HTPST T PS P STP +T ST S+ +TP
Sbjct: 440 PSTPSTPSTPSLTHTPSTPST-PSTP-STPSTPSTPSTPSTPSTP 482
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 501 SGETSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
S ++P+ +S T TPST T PS P + L HT ++ + +TP
Sbjct: 641 STPSTPSTRSTPSTPSTPSTPSTPST-PSTPSTPSLTHTPSTPSTPSTP 688
>SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 558 TPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
TP T PS +TPL+ TT +L +TTP
Sbjct: 26 TPPLVTTTPSLVTTTPLLVTTTPSLVTTTP 55
>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1386
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 252 QQTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 166
+QT+ +EQ HG ++ HGK + RGK+++
Sbjct: 753 EQTHGKIEQTHGKIEQTHGKIEQTRGKIEQ 782
>SB_17699| Best HMM Match : CsbD (HMM E-Value=0.014)
Length = 178
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 252 QQTNSGLEQ-HGTLQGQHGKPQGQRGKLQE 166
+QT+ +EQ HG ++ HGK + RGK+++
Sbjct: 83 EQTHGKIEQTHGKIEQTHGKIEQTRGKIEQ 112
>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 84 GPVPPGDQLGTTPQMRT 34
G VPPGD++G TP RT
Sbjct: 212 GGVPPGDEVGITPMYRT 228
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 549 RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
+A P+T + + P+S P+ TT +T +TTP
Sbjct: 381 KAKPPTTTPSKATAPISDPMTTTTPTTTKATTP 413
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 432 VAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSATVTQ*RAHTPSTKLTAP-SEPLSTPL 608
VA QA Y ++++ D + P K+ T + TPS K TAP S+P++T
Sbjct: 349 VAFQATISVERAYRSDFALDDI---KIEPCKRPPTKAKPPTTTPS-KATAPISDPMTTTT 404
Query: 609 MHTTASTLSSTT 644
TT +T +TT
Sbjct: 405 PTTTKATTPTTT 416
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 459 YPKYEYNYSVADGHSGETSPNKKSATVTQ*RAHTPST-KLTAPSEPLSTPL 608
YP Y+++ +G+TSP + + +A T ST K T PS P P+
Sbjct: 3136 YPVVAGEYTISIKFAGQTSPTVLTTLPSSRQAGTSSTAKATRPSVPPEEPV 3186
>SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)
Length = 159
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 345 VTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEI 455
VTY+ P VTY V+Y P A H+ +EI
Sbjct: 67 VTYYVTPYHVTYSVTLYHVTYCVTPYATAATHKKKEI 103
>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 830
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/95 (25%), Positives = 36/95 (37%)
Frame = +3
Query: 363 PAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSATVT 542
P+PVT AP + + EI P + + T+P+ + +
Sbjct: 253 PSPVTVQEAPPSTQTETETQQASTNRNRTEI--PPLSSLIATHNHSPPNTAPSPPNIAPS 310
Query: 543 Q*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
PS TAPS P S P+ + L+ST P
Sbjct: 311 PPNI-APSPPNTAPSPPHSDPIAAALSGNLASTAP 344
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 28.7 bits (61), Expect = 4.3
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +3
Query: 336 ATPVTYHAAPA--PVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGE 509
A+P ++PA P + +PA+ SY +P + + + Y +YS
Sbjct: 408 ASPGYSPSSPAFMPSSPSMSPASPSY--SPTSPGYSPSSPSSGYSPASPSYSPTSPSYSP 465
Query: 510 TSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
TSP+ S T +PS T+PS ++P T+ + S T+P
Sbjct: 466 TSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 510
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 510 TSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
T+P K + T T TP+T T +TP TT + ++TTP
Sbjct: 73 TTPTKPTTT-TPPATTTPTTPTTTTPPATTTPTKPTTTTPPATTTP 117
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 504 GETSPNKKSATVTQ*RAHTPSTKLTAPSEPLST-PLMHTTASTLSSTTP 647
G T+P K + T A T TK T + P +T P TT + ++TTP
Sbjct: 127 GTTTPTKPTTTTPP--ATTTPTKPTTTTPPATTTPTKPTTTTPPATTTP 173
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 510 TSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
+SP S+ +T T S+ LT+PS PL++ T++S L+S++P
Sbjct: 206 SSPLTSSSPLTSSSPLTSSSPLTSPS-PLTSSSPLTSSSPLTSSSP 250
>SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 558 TPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
TP+ +T P+ ++TP + T TL TTP
Sbjct: 3 TPTLLMTTPTLVMTTPTLVMTTPTLVMTTP 32
>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
Length = 941
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = -3
Query: 234 LEQHGTLQGQHG-----KPQGQRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPP 70
+ G Q +HG K QG G+ Q +E RH ++ S ++MS P
Sbjct: 640 ISSQGMQQSEHGIFGSRKRQGNGGQPSSDQLPSEINIARHAIKISEESEKRKMSEERGPS 699
Query: 69 GDQL 58
GD L
Sbjct: 700 GDGL 703
>SB_26794| Best HMM Match : DENN (HMM E-Value=1.4e-38)
Length = 595
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 390 PAAVSYHSAPVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKS 530
P AV P+ I+ E+ +P ++ V G SG+ +PN KS
Sbjct: 230 PEAVPMFCLPLGAIIECWPEKCQHPLPLFSTFVLTGASGQKNPNLKS 276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,020,165
Number of Sequences: 59808
Number of extensions: 293981
Number of successful extensions: 1276
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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