BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0750 (647 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 35 0.041 At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 32 0.29 At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate reductoi... 31 0.50 At3g12410.1 68416.m01546 hypothetical protein 29 2.0 At5g01280.1 68418.m00037 expressed protein 29 2.7 At4g28520.3 68417.m04081 12S seed storage protein, putative / cr... 29 2.7 At4g28520.2 68417.m04079 12S seed storage protein, putative / cr... 29 2.7 At4g28520.1 68417.m04080 12S seed storage protein, putative / cr... 29 2.7 At2g34330.1 68415.m04202 expressed protein 29 2.7 At3g12440.1 68416.m01549 extensin family protein contains simila... 28 4.7 At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote... 28 4.7 At1g27430.1 68414.m03343 GYF domain-containing protein contains ... 28 4.7 At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 28 6.1 At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 28 6.1 At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 28 6.1 At1g47960.1 68414.m05342 invertase/pectin methylesterase inhibit... 27 8.1 At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa... 27 8.1 At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domai... 27 8.1 >At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam PF00400: WD domain, G-beta repeats; Length = 1327 Score = 35.1 bits (77), Expect = 0.041 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Frame = +3 Query: 360 APAPVTYHAAPAAVSYHSA-PVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSAT 536 +PAP T A A S +A PV V E P + S+ + ++PN ++AT Sbjct: 1203 SPAPGTAAVAEAPASETAAAPVDGPVTETVSEPP-PVEKEETSLEEKSDPSSTPNTETAT 1261 Query: 537 VTQ*RAHT---PSTKLTAPSEPLSTPLMHTTASTLSSTT 644 T+ + T P + TAP EP++T T +T T Sbjct: 1262 STENTSQTTTTPESVTTAPPEPITTAPPETVTTTAVKPT 1300 >At4g13340.1 68417.m02084 leucine-rich repeat family protein / extensin family protein similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 760 Score = 32.3 bits (70), Expect = 0.29 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +3 Query: 336 ATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYE 473 + P PAPV +H+ P + +HS P V HQ+ P+YE Sbjct: 697 SAPCEESPPPAPVVHHSPPPPMVHHSPPPP--VIHQSPPPPSPEYE 740 >At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) nearly identical to 1-deoxy-d-xylulose-5-phosphate reductoisomerase [Arabidopsis thaliana] GI:4886307; contains Pfam profile PF02670: 1-deoxy-D-xylulose 5-phosphate reductoisomerase Length = 477 Score = 31.5 bits (68), Expect = 0.50 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -3 Query: 162 QRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGDQLGTTPQ 43 +R N+ RGF GV+CS K+ QQ P PG + P+ Sbjct: 36 RRRNQGRGFGKGVKCS-VKVQQQQQPPPAWPGRAVPEAPR 74 >At3g12410.1 68416.m01546 hypothetical protein Length = 230 Score = 29.5 bits (63), Expect = 2.0 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 339 TPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 434 TP +Y++ P P Y+A P + Y+S A I+ Sbjct: 65 TPFSYYSDPRPNNYYADPPPIRYYSDNPADIL 96 >At5g01280.1 68418.m00037 expressed protein Length = 460 Score = 29.1 bits (62), Expect = 2.7 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +3 Query: 501 SGETSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSST 641 SG P+ S++ + R TP+ K P++ STP T++T +T Sbjct: 80 SGIRRPSSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATSTTTRAT 126 >At4g28520.3 68417.m04081 12S seed storage protein, putative / cruciferin, putative strong similarity to SP|P33525 Cruciferin CRU1 precursor (11S globulin) (12S storage protein) from Brassica napus; contains Pfam profile PF00190 Cupin and Prosite 11-S plant seed storage proteins signature PS00305 isoform contains non-consensus AC acceptor splice site at intron 3 Length = 453 Score = 29.1 bits (62), Expect = 2.7 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -3 Query: 267 WEETAQQTNSGLE-QHGTLQGQHGKP--QGQRGKLQEPQRHNEHRGFR 133 WE QQ G + Q QGQ G+ QGQ+G+ E Q +GFR Sbjct: 143 WEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWEGQGQQGQQGFR 190 >At4g28520.2 68417.m04079 12S seed storage protein, putative / cruciferin, putative strong similarity to SP|P33525 Cruciferin CRU1 precursor (11S globulin) (12S storage protein) from Brassica napus; contains Pfam profile PF00190 Cupin and Prosite 11-S plant seed storage proteins signature PS00305 isoform contains non-consensus AC acceptor splice site at intron 3 Length = 394 Score = 29.1 bits (62), Expect = 2.7 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -3 Query: 267 WEETAQQTNSGLE-QHGTLQGQHGKP--QGQRGKLQEPQRHNEHRGFR 133 WE QQ G + Q QGQ G+ QGQ+G+ E Q +GFR Sbjct: 143 WEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWEGQGQQGQQGFR 190 >At4g28520.1 68417.m04080 12S seed storage protein, putative / cruciferin, putative strong similarity to SP|P33525 Cruciferin CRU1 precursor (11S globulin) (12S storage protein) from Brassica napus; contains Pfam profile PF00190 Cupin and Prosite 11-S plant seed storage proteins signature PS00305 isoform contains non-consensus AC acceptor splice site at intron 3 Length = 524 Score = 29.1 bits (62), Expect = 2.7 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -3 Query: 267 WEETAQQTNSGLE-QHGTLQGQHGKP--QGQRGKLQEPQRHNEHRGFR 133 WE QQ G + Q QGQ G+ QGQ+G+ E Q +GFR Sbjct: 143 WEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWEGQGQQGQQGFR 190 >At2g34330.1 68415.m04202 expressed protein Length = 143 Score = 29.1 bits (62), Expect = 2.7 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -3 Query: 186 QRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPP 70 ++ K ++ +R NE R F H V +K P+Q SS V P Sbjct: 68 KKQKKEKMKRLNELRSFSHAVNDQKKKAPKQESSKKVFP 106 >At3g12440.1 68416.m01549 extensin family protein contains similarity to Swiss-Prot:Q38913 extensin 1 precursor (AtExt1) (AtExt4) [Arabidopsis thaliana] Length = 353 Score = 28.3 bits (60), Expect = 4.7 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 Query: 339 TPVTYHAAPAPVTYHAAPAAVSYHS 413 +PV+YH+ +PVT+H V Y S Sbjct: 73 SPVSYHSDSSPVTHHYDSPPVCYRS 97 >At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein kinase, putative similar to brassinosteroid insensitive protein Length = 1143 Score = 28.3 bits (60), Expect = 4.7 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 43 LWRCPKLVSWRNRSTTHLLGQFPPR 117 L +C LV W + +T HL G+ PPR Sbjct: 515 LGKCTTLV-WLDLNTNHLTGEIPPR 538 >At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam profile: PF02213 GYF domain Length = 1531 Score = 28.3 bits (60), Expect = 4.7 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = -3 Query: 228 QHGTLQGQHGKPQGQRGKLQ-EPQRHNEHR 142 Q+G Q Q+G+ Q Q G+LQ EP R E++ Sbjct: 926 QYGQKQSQYGQMQSQHGQLQSEPIRSLEYQ 955 >At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain; Length = 299 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +3 Query: 552 AHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647 A TP+ A +E ++TP+ +T+SS+TP Sbjct: 129 APTPTPAPVAATETVTTPIPEPVPATISSSTP 160 >At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain; Length = 419 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +3 Query: 552 AHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647 A TP+ A +E ++TP+ +T+SS+TP Sbjct: 129 APTPTPAPVAATETVTTPIPEPVPATISSSTP 160 >At2g35110.1 68415.m04307 HEM protein-related weak similarity to Membrane-associated protein Hem (Dhem-2) (Swiss-Prot:P55162) [Drosophila melanogaster]; weak similarity to Nck-associated protein 1 (NAP 1) (p125Nap1) (Membrane-associated protein HEM-2) (Swiss-Prot:P55161) [Rattus norvegicus] Length = 1339 Score = 27.9 bits (59), Expect = 6.1 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +3 Query: 540 TQ*RAHTPSTKLT--APSEPLSTPLMHTTASTLSSTTP 647 TQ ++TPST L+ +P S L+H + S +STTP Sbjct: 1204 TQYYSNTPSTPLSTASPYHSPSVSLIHASPSMKNSTTP 1241 >At1g47960.1 68414.m05342 invertase/pectin methylesterase inhibitor family protein low similarity to SP|P83326 Pectinesterase inhibitor (Pectin methylesterase inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor Length = 205 Score = 27.5 bits (58), Expect = 8.1 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = -2 Query: 646 GVVDDSVEAVVCISGVLNGSDGAVSFVEGV*ALHCVTVADF 524 GV+D VEA VC G NGS S + + + VT A F Sbjct: 123 GVIDAGVEASVC-QGGFNGSSPLTSLTKSMQKISNVTRAIF 162 >At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097: Zinc finger, C3HC4 type (RING finger) Length = 381 Score = 27.5 bits (58), Expect = 8.1 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -3 Query: 231 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 127 E H L QG +G+L PQ + RGFR G Sbjct: 256 EIHDQLVNSSLGKQGSKGQLALPQERSSVRGFRTG 290 >At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domain, PF03109: ABC1 family Length = 624 Score = 27.5 bits (58), Expect = 8.1 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 402 SYHSAPVAKIVAHQAEEIAYPKYEYNYS 485 SY +AP +V+H A +IA+ + Y YS Sbjct: 78 SYTTAPARNVVSHHA-QIAWRRLHYKYS 104 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,711,479 Number of Sequences: 28952 Number of extensions: 198854 Number of successful extensions: 723 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 718 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1344285648 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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