Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0750
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 35 0.041
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 32 0.29
At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate reductoi... 31 0.50
At3g12410.1 68416.m01546 hypothetical protein 29 2.0
At5g01280.1 68418.m00037 expressed protein 29 2.7
At4g28520.3 68417.m04081 12S seed storage protein, putative / cr... 29 2.7
At4g28520.2 68417.m04079 12S seed storage protein, putative / cr... 29 2.7
At4g28520.1 68417.m04080 12S seed storage protein, putative / cr... 29 2.7
At2g34330.1 68415.m04202 expressed protein 29 2.7
At3g12440.1 68416.m01549 extensin family protein contains simila... 28 4.7
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote... 28 4.7
At1g27430.1 68414.m03343 GYF domain-containing protein contains ... 28 4.7
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 28 6.1
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 28 6.1
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 28 6.1
At1g47960.1 68414.m05342 invertase/pectin methylesterase inhibit... 27 8.1
At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa... 27 8.1
At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domai... 27 8.1
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 35.1 bits (77), Expect = 0.041
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +3
Query: 360 APAPVTYHAAPAAVSYHSA-PVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSAT 536
+PAP T A A S +A PV V E P + S+ + ++PN ++AT
Sbjct: 1203 SPAPGTAAVAEAPASETAAAPVDGPVTETVSEPP-PVEKEETSLEEKSDPSSTPNTETAT 1261
Query: 537 VTQ*RAHT---PSTKLTAPSEPLSTPLMHTTASTLSSTT 644
T+ + T P + TAP EP++T T +T T
Sbjct: 1262 STENTSQTTTTPESVTTAPPEPITTAPPETVTTTAVKPT 1300
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 336 ATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYE 473
+ P PAPV +H+ P + +HS P V HQ+ P+YE
Sbjct: 697 SAPCEESPPPAPVVHHSPPPPMVHHSPPPP--VIHQSPPPPSPEYE 740
>At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate
reductoisomerase (DXR) nearly identical to
1-deoxy-d-xylulose-5-phosphate reductoisomerase
[Arabidopsis thaliana] GI:4886307; contains Pfam profile
PF02670: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Length = 477
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 162 QRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGDQLGTTPQ 43
+R N+ RGF GV+CS K+ QQ P PG + P+
Sbjct: 36 RRRNQGRGFGKGVKCS-VKVQQQQQPPPAWPGRAVPEAPR 74
>At3g12410.1 68416.m01546 hypothetical protein
Length = 230
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 339 TPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 434
TP +Y++ P P Y+A P + Y+S A I+
Sbjct: 65 TPFSYYSDPRPNNYYADPPPIRYYSDNPADIL 96
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 501 SGETSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSST 641
SG P+ S++ + R TP+ K P++ STP T++T +T
Sbjct: 80 SGIRRPSSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATSTTTRAT 126
>At4g28520.3 68417.m04081 12S seed storage protein, putative /
cruciferin, putative strong similarity to SP|P33525
Cruciferin CRU1 precursor (11S globulin) (12S storage
protein) from Brassica napus; contains Pfam profile
PF00190 Cupin and Prosite 11-S plant seed storage
proteins signature PS00305 isoform contains
non-consensus AC acceptor splice site at intron 3
Length = 453
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 267 WEETAQQTNSGLE-QHGTLQGQHGKP--QGQRGKLQEPQRHNEHRGFR 133
WE QQ G + Q QGQ G+ QGQ+G+ E Q +GFR
Sbjct: 143 WEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWEGQGQQGQQGFR 190
>At4g28520.2 68417.m04079 12S seed storage protein, putative /
cruciferin, putative strong similarity to SP|P33525
Cruciferin CRU1 precursor (11S globulin) (12S storage
protein) from Brassica napus; contains Pfam profile
PF00190 Cupin and Prosite 11-S plant seed storage
proteins signature PS00305 isoform contains
non-consensus AC acceptor splice site at intron 3
Length = 394
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 267 WEETAQQTNSGLE-QHGTLQGQHGKP--QGQRGKLQEPQRHNEHRGFR 133
WE QQ G + Q QGQ G+ QGQ+G+ E Q +GFR
Sbjct: 143 WEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWEGQGQQGQQGFR 190
>At4g28520.1 68417.m04080 12S seed storage protein, putative /
cruciferin, putative strong similarity to SP|P33525
Cruciferin CRU1 precursor (11S globulin) (12S storage
protein) from Brassica napus; contains Pfam profile
PF00190 Cupin and Prosite 11-S plant seed storage
proteins signature PS00305 isoform contains
non-consensus AC acceptor splice site at intron 3
Length = 524
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 267 WEETAQQTNSGLE-QHGTLQGQHGKP--QGQRGKLQEPQRHNEHRGFR 133
WE QQ G + Q QGQ G+ QGQ+G+ E Q +GFR
Sbjct: 143 WEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWEGQGQQGQQGFR 190
>At2g34330.1 68415.m04202 expressed protein
Length = 143
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 186 QRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPP 70
++ K ++ +R NE R F H V +K P+Q SS V P
Sbjct: 68 KKQKKEKMKRLNELRSFSHAVNDQKKKAPKQESSKKVFP 106
>At3g12440.1 68416.m01549 extensin family protein contains
similarity to Swiss-Prot:Q38913 extensin 1 precursor
(AtExt1) (AtExt4) [Arabidopsis thaliana]
Length = 353
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 339 TPVTYHAAPAPVTYHAAPAAVSYHS 413
+PV+YH+ +PVT+H V Y S
Sbjct: 73 SPVSYHSDSSPVTHHYDSPPVCYRS 97
>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
kinase, putative similar to brassinosteroid insensitive
protein
Length = 1143
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 43 LWRCPKLVSWRNRSTTHLLGQFPPR 117
L +C LV W + +T HL G+ PPR
Sbjct: 515 LGKCTTLV-WLDLNTNHLTGEIPPR 538
>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
profile: PF02213 GYF domain
Length = 1531
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 228 QHGTLQGQHGKPQGQRGKLQ-EPQRHNEHR 142
Q+G Q Q+G+ Q Q G+LQ EP R E++
Sbjct: 926 QYGQKQSQYGQMQSQHGQLQSEPIRSLEYQ 955
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 552 AHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
A TP+ A +E ++TP+ +T+SS+TP
Sbjct: 129 APTPTPAPVAATETVTTPIPEPVPATISSSTP 160
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 552 AHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
A TP+ A +E ++TP+ +T+SS+TP
Sbjct: 129 APTPTPAPVAATETVTTPIPEPVPATISSSTP 160
>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
Membrane-associated protein Hem (Dhem-2)
(Swiss-Prot:P55162) [Drosophila melanogaster]; weak
similarity to Nck-associated protein 1 (NAP 1) (p125Nap1)
(Membrane-associated protein HEM-2) (Swiss-Prot:P55161)
[Rattus norvegicus]
Length = 1339
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 540 TQ*RAHTPSTKLT--APSEPLSTPLMHTTASTLSSTTP 647
TQ ++TPST L+ +P S L+H + S +STTP
Sbjct: 1204 TQYYSNTPSTPLSTASPYHSPSVSLIHASPSMKNSTTP 1241
>At1g47960.1 68414.m05342 invertase/pectin methylesterase inhibitor
family protein low similarity to SP|P83326
Pectinesterase inhibitor (Pectin methylesterase
inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 205
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 646 GVVDDSVEAVVCISGVLNGSDGAVSFVEGV*ALHCVTVADF 524
GV+D VEA VC G NGS S + + + VT A F
Sbjct: 123 GVIDAGVEASVC-QGGFNGSSPLTSLTKSMQKISNVTRAIF 162
>At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 381
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 231 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 127
E H L QG +G+L PQ + RGFR G
Sbjct: 256 EIHDQLVNSSLGKQGSKGQLALPQERSSVRGFRTG 290
>At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 624
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 402 SYHSAPVAKIVAHQAEEIAYPKYEYNYS 485
SY +AP +V+H A +IA+ + Y YS
Sbjct: 78 SYTTAPARNVVSHHA-QIAWRRLHYKYS 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,711,479
Number of Sequences: 28952
Number of extensions: 198854
Number of successful extensions: 723
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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