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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0750
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ...    35   0.041
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    32   0.29 
At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate reductoi...    31   0.50 
At3g12410.1 68416.m01546 hypothetical protein                          29   2.0  
At5g01280.1 68418.m00037 expressed protein                             29   2.7  
At4g28520.3 68417.m04081 12S seed storage protein, putative / cr...    29   2.7  
At4g28520.2 68417.m04079 12S seed storage protein, putative / cr...    29   2.7  
At4g28520.1 68417.m04080 12S seed storage protein, putative / cr...    29   2.7  
At2g34330.1 68415.m04202 expressed protein                             29   2.7  
At3g12440.1 68416.m01549 extensin family protein contains simila...    28   4.7  
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    28   4.7  
At1g27430.1 68414.m03343 GYF domain-containing protein contains ...    28   4.7  
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ...    28   6.1  
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ...    28   6.1  
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ...    28   6.1  
At1g47960.1 68414.m05342 invertase/pectin methylesterase inhibit...    27   8.1  
At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa...    27   8.1  
At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domai...    27   8.1  

>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
            PF00400: WD domain, G-beta repeats;
          Length = 1327

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +3

Query: 360  APAPVTYHAAPAAVSYHSA-PVAKIVAHQAEEIAYPKYEYNYSVADGHSGETSPNKKSAT 536
            +PAP T   A A  S  +A PV   V     E   P  +   S+ +     ++PN ++AT
Sbjct: 1203 SPAPGTAAVAEAPASETAAAPVDGPVTETVSEPP-PVEKEETSLEEKSDPSSTPNTETAT 1261

Query: 537  VTQ*RAHT---PSTKLTAPSEPLSTPLMHTTASTLSSTT 644
             T+  + T   P +  TAP EP++T    T  +T    T
Sbjct: 1262 STENTSQTTTTPESVTTAPPEPITTAPPETVTTTAVKPT 1300


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 336 ATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYE 473
           + P      PAPV +H+ P  + +HS P    V HQ+     P+YE
Sbjct: 697 SAPCEESPPPAPVVHHSPPPPMVHHSPPPP--VIHQSPPPPSPEYE 740


>At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase (DXR) nearly identical to
           1-deoxy-d-xylulose-5-phosphate reductoisomerase
           [Arabidopsis thaliana] GI:4886307; contains Pfam profile
           PF02670: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
          Length = 477

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 162 QRHNEHRGFRHGVRCSGRKLPQQMSSGPVPPGDQLGTTPQ 43
           +R N+ RGF  GV+CS  K+ QQ    P  PG  +   P+
Sbjct: 36  RRRNQGRGFGKGVKCS-VKVQQQQQPPPAWPGRAVPEAPR 74


>At3g12410.1 68416.m01546 hypothetical protein
          Length = 230

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 339 TPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 434
           TP +Y++ P P  Y+A P  + Y+S   A I+
Sbjct: 65  TPFSYYSDPRPNNYYADPPPIRYYSDNPADIL 96


>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 501 SGETSPNKKSATVTQ*RAHTPSTKLTAPSEPLSTPLMHTTASTLSST 641
           SG   P+  S++ +  R  TP+ K   P++  STP    T++T  +T
Sbjct: 80  SGIRRPSSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATSTTTRAT 126


>At4g28520.3 68417.m04081 12S seed storage protein, putative /
           cruciferin, putative strong similarity to SP|P33525
           Cruciferin CRU1 precursor (11S globulin) (12S storage
           protein) from Brassica napus; contains Pfam profile
           PF00190 Cupin and Prosite 11-S plant seed storage
           proteins signature PS00305 isoform contains
           non-consensus AC acceptor splice site at intron 3
          Length = 453

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 267 WEETAQQTNSGLE-QHGTLQGQHGKP--QGQRGKLQEPQRHNEHRGFR 133
           WE   QQ   G + Q    QGQ G+   QGQ+G+  E Q     +GFR
Sbjct: 143 WEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWEGQGQQGQQGFR 190


>At4g28520.2 68417.m04079 12S seed storage protein, putative /
           cruciferin, putative strong similarity to SP|P33525
           Cruciferin CRU1 precursor (11S globulin) (12S storage
           protein) from Brassica napus; contains Pfam profile
           PF00190 Cupin and Prosite 11-S plant seed storage
           proteins signature PS00305 isoform contains
           non-consensus AC acceptor splice site at intron 3
          Length = 394

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 267 WEETAQQTNSGLE-QHGTLQGQHGKP--QGQRGKLQEPQRHNEHRGFR 133
           WE   QQ   G + Q    QGQ G+   QGQ+G+  E Q     +GFR
Sbjct: 143 WEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWEGQGQQGQQGFR 190


>At4g28520.1 68417.m04080 12S seed storage protein, putative /
           cruciferin, putative strong similarity to SP|P33525
           Cruciferin CRU1 precursor (11S globulin) (12S storage
           protein) from Brassica napus; contains Pfam profile
           PF00190 Cupin and Prosite 11-S plant seed storage
           proteins signature PS00305 isoform contains
           non-consensus AC acceptor splice site at intron 3
          Length = 524

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 267 WEETAQQTNSGLE-QHGTLQGQHGKP--QGQRGKLQEPQRHNEHRGFR 133
           WE   QQ   G + Q    QGQ G+   QGQ+G+  E Q     +GFR
Sbjct: 143 WEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPWEGQGQQGQQGFR 190


>At2g34330.1 68415.m04202 expressed protein 
          Length = 143

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 186 QRGKLQEPQRHNEHRGFRHGVRCSGRKLPQQMSSGPVPP 70
           ++ K ++ +R NE R F H V    +K P+Q SS  V P
Sbjct: 68  KKQKKEKMKRLNELRSFSHAVNDQKKKAPKQESSKKVFP 106


>At3g12440.1 68416.m01549 extensin family protein contains
           similarity to Swiss-Prot:Q38913 extensin 1 precursor
           (AtExt1) (AtExt4) [Arabidopsis thaliana]
          Length = 353

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 339 TPVTYHAAPAPVTYHAAPAAVSYHS 413
           +PV+YH+  +PVT+H     V Y S
Sbjct: 73  SPVSYHSDSSPVTHHYDSPPVCYRS 97


>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
           kinase, putative similar to brassinosteroid insensitive
           protein
          Length = 1143

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 43  LWRCPKLVSWRNRSTTHLLGQFPPR 117
           L +C  LV W + +T HL G+ PPR
Sbjct: 515 LGKCTTLV-WLDLNTNHLTGEIPPR 538


>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1531

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 228  QHGTLQGQHGKPQGQRGKLQ-EPQRHNEHR 142
            Q+G  Q Q+G+ Q Q G+LQ EP R  E++
Sbjct: 926  QYGQKQSQYGQMQSQHGQLQSEPIRSLEYQ 955


>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 299

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 552 AHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
           A TP+    A +E ++TP+     +T+SS+TP
Sbjct: 129 APTPTPAPVAATETVTTPIPEPVPATISSSTP 160


>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 419

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 552 AHTPSTKLTAPSEPLSTPLMHTTASTLSSTTP 647
           A TP+    A +E ++TP+     +T+SS+TP
Sbjct: 129 APTPTPAPVAATETVTTPIPEPVPATISSSTP 160


>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
            Membrane-associated protein Hem (Dhem-2)
            (Swiss-Prot:P55162) [Drosophila melanogaster]; weak
            similarity to Nck-associated protein 1 (NAP 1) (p125Nap1)
            (Membrane-associated protein HEM-2) (Swiss-Prot:P55161)
            [Rattus norvegicus]
          Length = 1339

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 540  TQ*RAHTPSTKLT--APSEPLSTPLMHTTASTLSSTTP 647
            TQ  ++TPST L+  +P    S  L+H + S  +STTP
Sbjct: 1204 TQYYSNTPSTPLSTASPYHSPSVSLIHASPSMKNSTTP 1241


>At1g47960.1 68414.m05342 invertase/pectin methylesterase inhibitor
           family protein low similarity to SP|P83326
           Pectinesterase inhibitor (Pectin methylesterase
           inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 205

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 646 GVVDDSVEAVVCISGVLNGSDGAVSFVEGV*ALHCVTVADF 524
           GV+D  VEA VC  G  NGS    S  + +  +  VT A F
Sbjct: 123 GVIDAGVEASVC-QGGFNGSSPLTSLTKSMQKISNVTRAIF 162


>At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 381

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 231 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 127
           E H  L       QG +G+L  PQ  +  RGFR G
Sbjct: 256 EIHDQLVNSSLGKQGSKGQLALPQERSSVRGFRTG 290


>At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 624

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 402 SYHSAPVAKIVAHQAEEIAYPKYEYNYS 485
           SY +AP   +V+H A +IA+ +  Y YS
Sbjct: 78  SYTTAPARNVVSHHA-QIAWRRLHYKYS 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,711,479
Number of Sequences: 28952
Number of extensions: 198854
Number of successful extensions: 723
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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