Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0749
         (315 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGQ2 Cluster: Cuticle protein 3; n=2; Bombycoidea|Rep...    81   6e-15
UniRef50_Q05196 Cluster: Polyadenylate-binding protein 5 (Poly(A...    31   5.0  
UniRef50_Q1AVH2 Cluster: Putative uncharacterized protein precur...    30   8.7  
UniRef50_Q7PK07 Cluster: ENSANGP00000023169; n=1; Anopheles gamb...    30   8.7  

>UniRef50_Q5MGQ2 Cluster: Cuticle protein 3; n=2; Bombycoidea|Rep:
           Cuticle protein 3 - Lonomia obliqua (Moth)
          Length = 197

 Score = 80.6 bits (190), Expect = 6e-15
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = +2

Query: 137 MNSFKVHYVIALCIVAAVGVPVEDGKWHPYHYGDSGKYIP 256
           MNS KV YVIALC+VA VG+P+EDGKWHPY YGDSG+YIP
Sbjct: 1   MNSVKVQYVIALCVVAVVGIPLEDGKWHPYKYGDSGRYIP 40



 Score = 52.4 bits (120), Expect = 2e-06
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 253 PTDEGKYIHIPNPYIHIDNPY 315
           P+DEGKYIHIPNPYIH+DNPY
Sbjct: 40  PSDEGKYIHIPNPYIHLDNPY 60


>UniRef50_Q05196 Cluster: Polyadenylate-binding protein 5
           (Poly(A)-binding protein 5); n=47; Viridiplantae|Rep:
           Polyadenylate-binding protein 5 (Poly(A)-binding protein
           5) - Arabidopsis thaliana (Mouse-ear cress)
          Length = 668

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -2

Query: 239 NRRNGKDAIFHPQQVHPPRLRCIAQSHNAP*RN 141
           NRRNG +A   PQ + P  L   A SHNAP R+
Sbjct: 536 NRRNGMEASA-PQGIIPLPLNASANSHNAPQRS 567


>UniRef50_Q1AVH2 Cluster: Putative uncharacterized protein
           precursor; n=1; Rubrobacter xylanophilus DSM 9941|Rep:
           Putative uncharacterized protein precursor - Rubrobacter
           xylanophilus (strain DSM 9941 / NBRC 16129)
          Length = 140

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 110 RNYKQSALRMNSFKVHYVIALCIVAAVGVPVEDGKWH--PYHYGDSGKYI 253
           R+++  AL + SF   Y   LC+VAA+G+P     W   P   G  G Y+
Sbjct: 64  RSFRSRALGVGSFPARY---LCVVAALGLPAYWEAWPVLPMAAGVCGVYL 110


>UniRef50_Q7PK07 Cluster: ENSANGP00000023169; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000023169 - Anopheles gambiae
           str. PEST
          Length = 232

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 253 PTDEGKYIHIPNPYIHIDNP 312
           P ++G+Y+H+ N Y H++ P
Sbjct: 82  PRNDGRYVHVDNRYKHVEGP 101


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 332,397,881
Number of Sequences: 1657284
Number of extensions: 6163926
Number of successful extensions: 14647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14645
length of database: 575,637,011
effective HSP length: 81
effective length of database: 441,397,007
effective search space used: 10152131161
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)