Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0749
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   0.89 
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    27   0.89 
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   1.5  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    23   8.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    23   8.3  

>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 280 CEYI-FLRLWDVFARIAVMVRMPFSILNRYTHRGYDA*R 167
           C +I FL  W V  +  +MV +PFSIL+    R  +A R
Sbjct: 350 CGWISFLFGWHVHEKAILMVILPFSILSLIDRRYLEAFR 388


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 119 KQSALRMNSFKVHYVIALCIVAAVGVPVEDGKW 217
           +Q   R    KVH +IA  I++AVG  +  GKW
Sbjct: 15  QQKPRRRRILKVHLLIAALILSAVGY-LGKGKW 46



 Score = 23.8 bits (49), Expect = 6.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 253 DVFARIAVMVRMPFSILNRYTHRGYDA*RNHIMHLEGI 140
           DV  R+A+     FS+ +      +D  RNHI  + GI
Sbjct: 143 DVVKRMALYYPKTFSLTDHSGKVKFDFLRNHISSMMGI 180


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 35  HSDLACLQCLPVPRTTVTRNCCCWNRNYKQSALRMNSFKVHYV 163
           + D+A L CLP   +  T+    WN +  + AL+  S   +Y+
Sbjct: 524 YQDVATLSCLPRYTSGKTQFYHRWNASRSEDALKFASELTNYL 566


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 251 CICQNRRNGKDAIFHPQQVHPPRLRCI 171
           C   N R G+D  FH +   P  L+C+
Sbjct: 7   CYLPNSRKGRDVNFHDR--GPETLKCL 31


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
 Frame = +2

Query: 92   NCCC--WNRNYKQSALRM 139
            N CC  WN   +QSA+R+
Sbjct: 1166 NLCCIDWNSQTRQSAIRL 1183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,564
Number of Sequences: 5004
Number of extensions: 25351
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)