Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0749
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559... 29 0.77
11_03_0067 - 9535565-9536157,9536446-9536757,9536948-9537212,953... 29 1.0
10_08_0125 - 15000650-15001717 28 1.3
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 28 1.3
10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977 28 1.8
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641... 28 1.8
12_01_0732 + 6524622-6524634,6524907-6525511 27 3.1
10_01_0286 - 2978630-2979075,2980050-2980194 27 3.1
01_06_0327 + 28506354-28506469,28506568-28507168,28507397-28507531 26 7.1
05_03_0245 + 10890555-10890962 25 9.4
05_03_0244 + 10857139-10857516 25 9.4
01_05_0567 - 23334967-23335006,23335225-23335394 25 9.4
>06_03_0813 - 24853119-24854480,24854711-24855442,24855556-24855962,
24856091-24856359,24856681-24856733,24857019-24857078,
24857309-24857363,24858080-24858155,24858225-24858801
Length = 1196
Score = 29.1 bits (62), Expect = 0.77
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 211 KMASLPLRRFWQIHPTDEGKYIHIPNPY 294
++ L RRF+++ P + GKY+ + N Y
Sbjct: 1088 RLVELAARRFFRLQPGNAGKYVVLANAY 1115
>11_03_0067 -
9535565-9536157,9536446-9536757,9536948-9537212,
9537810-9538048,9538400-9538568,9539216-9539410,
9539649-9539766,9542140-9542315
Length = 688
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 307 YQCECKGWECEYIFL-RLWDVFARIAVMVRMPFSILNRYT 191
Y+CECK W +F + V + + V +P IL RYT
Sbjct: 481 YECECKTWIHTGLFCPHIVRVLSHLQVEKILPRYILKRYT 520
>10_08_0125 - 15000650-15001717
Length = 355
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 301 CECKGWECEYIFLRLWDVFARIAVMVRMPFSILNRY 194
C +C IFL L D+ VM + FS+L+RY
Sbjct: 58 CRDSNKDCISIFLVLEDIVTDEDVMAKATFSLLDRY 93
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 229 LRRFWQIHPTDEGKYIHIPNPYIHIDN 309
L F H DE Y+H PN YI +N
Sbjct: 259 LEVFVSFHSNDEDWYMHPPNEYIEANN 285
>10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977
Length = 614
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 280 CEYIFLRLWDVFARIAVMVRMPFSILNRY 194
C IFL L D+ VM ++ FS+L+RY
Sbjct: 80 CISIFLVLKDIVTEEDVMAKVTFSLLDRY 108
>02_04_0199 -
20861793-20862023,20862588-20862798,20863260-20864142,
20864363-20865608
Length = 856
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 170 LCIVAAVGVPVEDGKWHPYHYGDSGKYIPQT 262
L +V+A V EDG+WHP + +P T
Sbjct: 509 LPLVSAAAVEEEDGEWHPLPLSAADLSLPLT 539
>12_01_0732 + 6524622-6524634,6524907-6525511
Length = 205
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 247 IHPTDEGKYIHIPNPYIHIDNPY 315
+HPT +Y IPNP +H D +
Sbjct: 178 LHPTHRLEYSGIPNPTLHWDRRF 200
>10_01_0286 - 2978630-2979075,2980050-2980194
Length = 196
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 149 KVHYVIALCIVAAVGVPVEDGKWHPYHYGDSGKYIPQTK 265
K HYV +C A + P++ + +H+ P TK
Sbjct: 127 KTHYVSPVCASATICEPIKKHFFDHFHHNKPAPAAPSTK 165
>01_06_0327 + 28506354-28506469,28506568-28507168,28507397-28507531
Length = 283
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 124 KCIKDEFLQGALCDCAMHRSRGGCTC*GWKMASLPLR 234
+C K E +G C + +R+ GC C K+ SLP R
Sbjct: 211 QCYKCEQSKGH-CSYSQNRAFLGCLCSDGKIISLPFR 246
>05_03_0245 + 10890555-10890962
Length = 135
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 72 GTGKHCKHARSLCG 31
G K CKH RS CG
Sbjct: 89 GCNKACKHGRSCCG 102
>05_03_0244 + 10857139-10857516
Length = 125
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 72 GTGKHCKHARSLCG 31
G K CKH RS CG
Sbjct: 80 GCNKACKHGRSCCG 93
>01_05_0567 - 23334967-23335006,23335225-23335394
Length = 69
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 44 LACLQCLPVPRTTVTRNCCCWNR 112
LA CLP PR CC R
Sbjct: 8 LAAASCLPAPRAPTCPTTCCMLR 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,365,866
Number of Sequences: 37544
Number of extensions: 181871
Number of successful extensions: 488
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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