Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0749
(315 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23936| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.11
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.60
SB_58417| Best HMM Match : zf-CCCH (HMM E-Value=0.96) 27 2.4
SB_57670| Best HMM Match : LON (HMM E-Value=6.8e-07) 27 2.4
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12) 27 3.2
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05) 26 5.6
SB_29317| Best HMM Match : Sushi (HMM E-Value=6.9e-26) 26 5.6
SB_27687| Best HMM Match : zf-B_box (HMM E-Value=6.7e-10) 26 5.6
SB_30420| Best HMM Match : Sushi (HMM E-Value=2.2e-13) 26 5.6
SB_30356| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.4
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_57317| Best HMM Match : SSF (HMM E-Value=0) 25 9.8
SB_49813| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_45984| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 25 9.8
SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
>SB_23936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 71 PRTTVTRNCCCWNRNYKQSALRMNSFKVHYVIALCIVAAVG 193
P+T CCCW+R YK + + IA ++ G
Sbjct: 6 PKTRTKGQCCCWSRRYKDIKAKQIQLRYQKEIANTVIRLGG 46
>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 29.5 bits (63), Expect = 0.60
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = +2
Query: 41 DLACLQCLPVPRTTVTRNCCCWNRNYKQSALRMNSFKVHYVIALCIVAAVGVPVED 208
DL+ L + + T TR RN K R FKVH +IA C VPVE+
Sbjct: 2 DLSGLAMI-LDNTKATRQIQARRRNTKALCKR-GGFKVHKIIANCKEVLQAVPVEE 55
>SB_58417| Best HMM Match : zf-CCCH (HMM E-Value=0.96)
Length = 210
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 62 LPVPRTTVTRNCCCWNR 112
LP PR+ T NC WNR
Sbjct: 137 LPQPRSRSTTNCISWNR 153
>SB_57670| Best HMM Match : LON (HMM E-Value=6.8e-07)
Length = 224
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 124 KCIKDEFLQGALCDCAMHRSRGGCTC*GWKMASLPLR 234
KCI D CD MH + G W +A+LPL+
Sbjct: 147 KCITDAIGPMPNCDPNMHVQQDGPEWVWWSLAALPLQ 183
>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
Length = 697
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2
Query: 191 GVPVEDGKWHPYHYG 235
G PV DGKWH HYG
Sbjct: 370 GPPVVDGKWH--HYG 382
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 26.6 bits (56), Expect = 4.2
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = -3
Query: 274 YIFLRLWDVFARIAVMVRMPFSILNRYT 191
++ R W ++ ++V+++M F + +YT
Sbjct: 1292 FLLKRSWQCYSVVSVLIKMEFLVTKKYT 1319
>SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05)
Length = 241
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +2
Query: 77 TTVTRNCCCWNRNYKQSALRMNSFK-VHYVIALCIVAAVGVPVEDGKWHPY 226
T T + CC + K + + V + + C+ + V D KWH Y
Sbjct: 102 TNATNSSCCKYQGGKSLGVSFVEYDTVSFEVNHCVPGSPENCVSDAKWHQY 152
>SB_29317| Best HMM Match : Sushi (HMM E-Value=6.9e-26)
Length = 803
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +2
Query: 2 TGGVVTVNEFPHSDLACLQCLPVPRTTVTRNCCCWNRNYK 121
T G + N + H D C R TRN C+N +K
Sbjct: 69 TNGWHSNNSYRHGDHVTYSCNQGYRLVGTRNITCYNGEWK 108
>SB_27687| Best HMM Match : zf-B_box (HMM E-Value=6.7e-10)
Length = 237
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 11 VVTVNEFPHSDLACLQCLPVPRTTVTRNCCCWNRNYKQSALRMNSFKVH 157
V+++ + S L+ L PV + + +CCC RN+++ S VH
Sbjct: 159 VLSIRKEVLSQLSSLAEKPVDQPCIN-SCCCVVRNFREHVHMFESGTVH 206
>SB_30420| Best HMM Match : Sushi (HMM E-Value=2.2e-13)
Length = 124
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +2
Query: 2 TGGVVTVNEFPHSDLACLQCLPVPRTTVTRNCCCWNRNYK 121
T G + N + H D C R TRN C+N +K
Sbjct: 69 TNGWHSNNSYRHGDHVTYSCNQGYRLVGTRNITCYNGEWK 108
>SB_30356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 222 GCHFPSSTGTPTAATMHS 169
G FPS T P AAT H+
Sbjct: 234 GTSFPSGTSAPVAATAHT 251
>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 232 RRFWQIHPTDEGKYIHIPNPYI 297
R+ W + P D Y +PN YI
Sbjct: 491 RKEWHMTPVDVNAYYSLPNNYI 512
>SB_57317| Best HMM Match : SSF (HMM E-Value=0)
Length = 389
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 98 CCWNRNYKQSALRMNS---FKVHYVIALCIVAAVGV 196
CCWN N ++ + M + V +V+ + ++ +G+
Sbjct: 6 CCWNNNNQEGSSSMTANTPMLVTFVVYIALMVMIGL 41
>SB_49813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 116 YKQSALRMNSFKVHYVIALCIVAAVGVPVEDGKWHPY 226
++ S R + + ++ L I+ AVG+P W PY
Sbjct: 4 WQSSDGREGGYSRYLMLPLGIIPAVGLPERHEAWAPY 40
>SB_45984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 89 RNCCCWNRNYKQSALRMNSFKVH 157
++CCC+ RN+++ S VH
Sbjct: 2 KSCCCFVRNFREHVHMFESGTVH 24
>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
Length = 717
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 199 C*GWKMASLPLRRFWQIHPTDEGKYIHIPNPYIHIDN 309
C +++ +LP+ F +H T Y +P +H++N
Sbjct: 77 CSRYQVFTLPIVHFISVHITKCSHYKVFTSPSVHVNN 113
>SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 774
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 191 GVPVEDGKWHPYHYGDSG 244
GV DGKWH H +G
Sbjct: 515 GVQYNDGKWHHVHLDKNG 532
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,832,881
Number of Sequences: 59808
Number of extensions: 221528
Number of successful extensions: 590
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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