Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0749
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   1.5  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   2.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   2.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   3.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    20   6.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    20   6.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    20   6.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   8.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 32  PHSDLACLQCLPVPRTTVTRNCC 100
           P+  + C  C P P T  T N C
Sbjct: 421 PNEIVTCTNCGPNPCTHTTTNGC 443


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 32  PHSDLACLQCLPVPRTTVTRNCC 100
           P+  + C  C P P T  T N C
Sbjct: 407 PNEIVTCTNCGPNPCTHTTTNGC 429


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 32  PHSDLACLQCLPVPRTTVTRNCC 100
           P+  + C  C P P T  T N C
Sbjct: 441 PNEIVTCTNCGPNPCTHTTTNGC 463


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 32  PHSDLACLQCLPVPRTTVTRNCC 100
           P+  + C  C P P T  T N C
Sbjct: 390 PNEIVTCTNCGPNPCTHTTTNGC 412


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 35  HSDLACLQCLPVPRTT 82
           H  ++C+ C P PR T
Sbjct: 384 HWQMSCVACSPPPRQT 399


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +2

Query: 107 NRNYKQSALRMNSFKVHYVIALC--IVAAVGVPVEDGKWHPYHYG 235
           N NYK      NS K++Y I     I   V VP+  G + P   G
Sbjct: 308 NYNYKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGNFPPRPMG 352


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +2

Query: 107 NRNYKQSALRMNSFKVHYVIALC--IVAAVGVPVEDGKWHPYHYG 235
           N NYK      NS K++Y I     I   V VP+  G + P   G
Sbjct: 319 NYNYKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGNFPPRPMG 363


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +2

Query: 83  VTRNCCCW 106
           V  +CCCW
Sbjct: 7   VVMSCCCW 14


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 113 NYKQSALRMNSFKVHYVIALCIVAAVGVPVEDGKWHPYHYG 235
           NY  +    N  K++Y I       + VPV  G + P   G
Sbjct: 99  NYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMG 139


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 113 NYKQSALRMNSFKVHYVIALCIVAAVGVPVEDGKWHPYHYG 235
           NY  +    N  K++Y I       + VPV  G + P   G
Sbjct: 99  NYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMG 139


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 113 NYKQSALRMNSFKVHYVIALCIVAAVGVPVEDGKWHPYHYG 235
           NY  +    N  K++Y I       + VPV  G + P   G
Sbjct: 99  NYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMG 139


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 63  KHCKHARSLCGNSFTVTTPPV 1
           K C++  SL GN    +  P+
Sbjct: 146 KSCRYTASLAGNVAPASADPM 166


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 262 EGKYIHIPNPYIHI 303
           +GKY+ +P+  +HI
Sbjct: 154 DGKYLVLPSGELHI 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,805
Number of Sequences: 438
Number of extensions: 2093
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)