Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0749
         (315 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    31   0.16 
At4g11450.1 68417.m01843 expressed protein                             27   2.6  
At4g01550.1 68417.m00201 no apical meristem (NAM) family protein...    27   2.6  
At2g33520.1 68415.m04109 expressed protein                             27   2.6  
At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof...    25   8.1  
At1g63520.1 68414.m07181 expressed protein                             25   8.1  

>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -2

Query: 239 NRRNGKDAIFHPQQVHPPRLRCIAQSHNAP*RN 141
           NRRNG +A   PQ + P  L   A SHNAP R+
Sbjct: 536 NRRNGMEASA-PQGIIPLPLNASANSHNAPQRS 567


>At4g11450.1 68417.m01843 expressed protein 
          Length = 694

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 178 RSRGGCTC*GWKMA 219
           RS GGC C GW MA
Sbjct: 539 RSGGGCDCGGWDMA 552


>At4g01550.1 68417.m00201 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 457

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 183 PRWVYLLRMENGILTITAILAN 248
           PR++YL+RM  G + + A+++N
Sbjct: 418 PRYIYLMRMIIGFILLLALISN 439


>At2g33520.1 68415.m04109 expressed protein 
          Length = 97

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 59  CLPVPRTTVTRNCCCW 106
           C P  R+ +T  CCCW
Sbjct: 71  CFPFLRSCLTTLCCCW 86


>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 366

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 220 SLPLRRFWQIHPTDEGKYIHIPNPYIHID 306
           SLPL   W++       +  + N Y+H+D
Sbjct: 91  SLPLAPLWELFFNQSSHHKSLYNVYVHVD 119


>At1g63520.1 68414.m07181 expressed protein
          Length = 528

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 178 RSRGGCTC*GWKM 216
           RS GGC C GW M
Sbjct: 401 RSGGGCDCSGWDM 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,277,856
Number of Sequences: 28952
Number of extensions: 139007
Number of successful extensions: 324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)