Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0748
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 191 6e-50
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 111 1e-25
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 105 5e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 1e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 1e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 51 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 34 0.014
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.055
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.29
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 4.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 191 bits (466), Expect = 6e-50
Identities = 89/119 (74%), Positives = 95/119 (79%)
Frame = +1
Query: 241 GTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 420
G + YVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 421 APLNPKANREKMTQIMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGVSHTVPIY 597
APLNPK+NREKMTQI+FETFN PA YVA L++ S DGV+HTVPIY
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIY 166
Score = 104 bits (250), Expect = 9e-24
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = +2
Query: 104 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKD 51
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 111 bits (266), Expect = 1e-25
Identities = 48/124 (38%), Positives = 79/124 (63%)
Frame = +1
Query: 226 RDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 405
+ G + + VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 406 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGVSHT 585
+LLTE P+NP ANREKM + MFE + +YVA L++ + S DGV+H
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHI 162
Query: 586 VPIY 597
VP+Y
Sbjct: 163 VPVY 166
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 110 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 214
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 105 bits (252), Expect = 5e-24
Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Frame = +1
Query: 253 LYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 429
++VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 430 NPKANREKMTQIMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGVSHTVPIY 597
N+EK+ + +ET N PA+ + LA+ + DG++H+VPIY
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIY 171
Score = 58.8 bits (136), Expect = 6e-10
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKD 55
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 97.1 bits (231), Expect = 2e-21
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 9/122 (7%)
Frame = +1
Query: 256 YVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 432
++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 433 PKANREKMTQIMFETFNTPAMYVASSRALAVR---VRSYHRYRAWT-----SRDGVSHTV 588
P NRE +IMFE+FN +Y+A LA+ S R+ T S DGV+H +
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHII 194
Query: 589 PI 594
P+
Sbjct: 195 PV 196
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 205
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.5 bits (150), Expect = 1e-11
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = +1
Query: 229 DGR--YGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 402
DGR +G E +Y +S G + +K I +G V NWD +W + +L+ P EH
Sbjct: 46 DGRRLFGEEYIY-----KSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEH 99
Query: 403 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVASSRALA 522
P+L+TE NP NR K + MFE+ PA Y+A A
Sbjct: 100 PILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCA 139
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 208
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.9 bits (141), Expect = 1e-10
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = +1
Query: 226 RDGRYGTEGLYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 402
RD + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 403 PVLLTEAPLNPKANREKMTQIMFETFNTPAM 495
P+ +TE NP R MT+++FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 217
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 YVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 429
YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 52 YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111
Query: 430 NPKANREKMTQIMFETFNTPAMYV 501
NP++ R+++ + FE + PA Y+
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYL 135
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 208
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.3 bits (75), Expect = 0.014
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +1
Query: 307 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 474
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 475 TFNTPAMYVA 504
P +A
Sbjct: 172 ECQVPGFTIA 181
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.3 bits (70), Expect = 0.055
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +1
Query: 253 LYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWH-HTFYNELRVAPEEHPVLLTE--A 423
LYV D++ + ++ P + D + + + +Y L E+HP+LLT+ A
Sbjct: 1360 LYVHDQSYDNAAAVMMEQPEAFDHQSFKDIIVHVANLELYYRALNFYLEQHPMLLTDLLA 1419
Query: 424 PLNPKANREKMTQIMFETFNTP 489
L P+ + ++ +I ++ NTP
Sbjct: 1420 ALTPRIDHPRVIRIFEKSENTP 1441
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.29
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 339 IPVSDDSVFDGVFEGQDTSFALCLISYIKSFCPIPTITP*WRGLPTIEGNTARGASSPAK 160
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 159 PALHIP 142
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 255 KSFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 151
KSF P+PT P LPT NT + P+ PAL
Sbjct: 68 KSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 237 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 103
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 409 LLTEAPLNPKANREKMTQIMFETFN 483
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 149 TYRSHCLLPTRQLLRRTS*ISEI 81
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +2
Query: 167 GDDAPRAVFPSIVGRPRHQGVMVGM----GQKDFM 259
G+ PRA F ++ P H G+++ M G ++FM
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISMKDWIGGEEFM 536
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,897
Number of Sequences: 5004
Number of extensions: 56204
Number of successful extensions: 162
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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